Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02019 ATGGATACCACGTTGTTTAGGGTAGTGAGTTTCTTAGAAGCGGATCAGGATGAATCTCTGAACAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCTCCAGACAACAAAACTATCCCTATCAGTATCATCGAGAGGAAGAAGGAGAAGAAGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCATCCAAGCACTACTGTCCCTATCAACCCACTGCAACACCGACCACGGACCTCTTCCCCTTGGAATTCTCCGGCAAGTGGGCCCACGACATCCTCCTAGAAACAGCACGTGCCGTGGCCGACAAAAACACCACGCGCCTCCAGCAGCTGATGTGGATGCTAAACGAGCTGGGTTCCCCCTACGGCGACACGGACCAGAAAATGGCCTTCTACTTCCTCCAAGGATTCTTCGCCCGCATCACCCAAGCCGGAGACCGAACCTACAGAACCTTAGCCTCCGCCTCCGAGAAAACATGCTCCTTCGAATCCACGCGGAAGACGGTACTCAAGTTCCAAGAGCTGAGTCCCTGGACAACCTTCGGACACGTGGCGTCCAATGGCGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAATTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCCTCGCCACTCGAAACGACGACACCCCGCATCTCCGCTTGACCTCCGTCGTCACCGCCGGCCCCACCACCCAGAACCTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCCGACTCATGGGCGTGCCCTTCAAATTCAACGTCGTTCATCACCTAGGTCAACTCTCCGACTTCGATTTCAATGTGTTGGACATTCAAGACGACGAGGCCTTGGCTATTAACTGTGTCAACACCTTGCATTCCATCACCGCCGTCGGGACCCACCGGGACTCGGTCATATCGTCCTTCAGGAGGCTGCAACCCAGGATCGTCACGCTCGTGGAGGAGGAGGCCGATTTCGACGTGGGATTGGAGGGGTTTGAGTTCGTTAAAGGGTTTGAAGAGTGCTTGAGGTGGTTTAGGGTTTACTTCGAGGCGTTGGAGGAGAGTTTTCCGCGGACCAGCAACGAGAGGTTGATGCTGGAGCGGGCGGCTGGGAGGGCGGTGGTGGATTTGGTGGCATGTTCGCCTGCCGATTCGGTTGAGCGGCGGGAGACGGCGGTGCGGTGGGCGAGGAGGATGCATGGAGGGGGGTTCAATACGCTTGCGTTTAGCGAAGAGGTGTGCGATGATGTGAGGGCGTTGTTGAGGAGGTATAGGGAGGGTTGGGCAATGACACAGTGTTCCGACGCCGGAATATTCCTCTCTTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGCGGGCCTTGACGTAG 1419 0.5553 MDTTLFRVVSFLEADQDESLNNNSTTSSSSRSSSRQQNYPYQYHREEEGEEEEECFNFFMDEEDLSSSSSKHYCPYQPTATPTTDLFPLEFSGKWAHDILLETARAVADKNTTRLQQLMWMLNELGSPYGDTDQKMAFYFLQGFFARITQAGDRTYRTLASASEKTCSFESTRKTVLKFQELSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGPTTQNLMKEIGARMEKFARLMGVPFKFNVVHHLGQLSDFDFNVLDIQDDEALAINCVNTLHSITAVGTHRDSVISSFRRLQPRIVTLVEEEADFDVGLEGFEFVKGFEECLRWFRVYFEALEESFPRTSNERLMLERAAGRAVVDLVACSPADSVERRETAVRWARRMHGGGFNTLAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLSWKEQPVVWASAWRALT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02019 472 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 459 IPR005202 -
Pste1g02019 472 MobiDBLite consensus disorder prediction 17 47 - -
Pste1g02019 472 Pfam GRAS domain family 98 469 IPR005202 -
Pste1g02019 472 ProSiteProfiles GRAS family profile. 87 469 IPR005202 -
Pste1g02019 472 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02019 Pste-Chr1 6318365 6319783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02019 4 469 GRAS Transcription Factor Family AT4G37650 57.925 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pste1g02019 GRAS 1.7e-102 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02019 1 6318365 6319783 Pste1g02019 1 6318365 6319783 ECH
Pste1g02019 1 6318365 6319783 Pste7g00912 7 8442509 8443957 PCT