Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02005 ATGTTTTTCAATGACAGCAGCATTATGCTTTTTAATAATGACAGGTTGGATAATCTTATATTAGAGTCCATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCAGCAATTGCTGCATATATAGAGGATCAATACTGTTCTACGCCGACCCTCAGAAAGTCATTGTCAACAAAACTGAAACACATGGTGGCAAGTGGAAAATTAATGAAGGTAAAGCATAAATATAGGATTGCTACAAATTTAACAATATCTGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGAAGGCCCAAACATTCTCCAAAAGCAGAGAAGACTGATGTCAACATCCTTTCAAAATCCGAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACACCTCAAGAGGCGGCAGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGATGTTGCAGAAGCTGAGGCAGAGGCTGCACGAGTGTTTGCGAAAGCAGCCATGAAGGCTCTAAAATGCAAGAGACTTCTTATTTGAGATGTAAAAATTAAACTTAGTGGTTGTCGTCTGATTGCTTGTTTTTGGACAGGGTACGTGAAAGAAGCCGGTTCAGATGTTTTGGGGAAATTAAATTGTAACCGAGTGGTAGCACATGCTTTGCACCATACAATAAACGGTGAAATATTGTAA 717 0.4184 MFFNDSSIMLFNNDRLDNLILESIIKLKEPKGSDRAAIAAYIEDQYCSTPTLRKSLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKHSPKAEKTDVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADVAEAEAEAARVFAKAAMKALKCKRLLI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02005 187 PANTHER SINGLE MYB HISTONE 4 15 183 IPR044597 GO:0003691
Pste1g02005 187 SMART h15plus2 16 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste1g02005 187 Pfam linker histone H1 and H5 family 17 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste1g02005 187 SUPERFAMILY "Winged helix" DNA-binding domain 15 89 IPR036390 -
Pste1g02005 187 Gene3D - 12 89 IPR036388 -
Pste1g02005 187 Coils Coil 135 169 - -
Pste1g02005 187 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02005 Pste-Chr1 6262956 6266000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02005 16 183 Single Myb Histone (SMH) Gene Family AT5G67580 50.888 6.82e-30 109