Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02003 GTTGGTCTTTTATTGGGTTCAGTGGATCCAGATCCAGTCCAAAAGAGAAAGGTAGGAAAAGAACGGGAACGCTCAAAAAACGATTTCGGAAAATGAAGGGATCTATCAGCAATTCAAAAAAAAATATTGAATTGCAAGTTTTTCTCAGGAAAGACATCCTTAACACAAAGAACCAGAAATAATTTTTTCTCGTAATTCTACGGTTCCTCGAAAGTACCAAATCCATATATCAGCGTGTGCATATTCCAAGTTGTACCAATTCACACCTTCGCCTCGCGATTTTTCGATGCGTTACACCTTTGTCCACCTATTCTTCTTTAATTTTTCTTCCCTTTTCCCCCCAATTTAACTAAATTTTGTGCCATCTATATTCCCAGGTAAGTAAAGTTATATTTTCCTTGTTGGTGGATGGACATGCAGAACAAGGCTGCACTCAACTTCCAAGTTTTCCACTAGAACAAAAGCAAAACTTATACTGTCATAAAAATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGTTGAAAGCTGGAGTAGTCAAGCATGGGGCTGGAAAATGGCGCACCATACTTACAGACCCAGAGTTCAGTTCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGAAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAATTTATTACCATCCCCCAAAATTGACAACAACCACTTGGCCTTGAGTACTGTAGTTCAACGTGACAAAGAAGTTGCAGACTCCAAGCCTCTGGCAGTTTCTGGTGGAATCTCTCCTAATTCAAAAGAAAAAATATCAAGGCAACAGAACTTCCAGTTAAATATATCTGTCATTTACTCTTGA 891 0.3962 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDNNHLALSTVVQRDKEVADSKPLAVSGGISPNSKEKISRQQNFQLNISVIYS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02003 134 Gene3D - 8 86 - -
Pste1g02003 134 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pste1g02003 134 FunFam Telomere repeat-binding factor 1 8 86 - -
Pste1g02003 134 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Pste1g02003 134 FunFam Telomere repeat-binding factor 1 2 58 - -
Pste1g02003 134 CDD SANT_TRF 6 57 - -
Pste1g02003 134 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pste1g02003 134 PANTHER SINGLE MYB HISTONE 4 1 118 IPR044597 GO:0003691
Pste1g02003 134 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pste1g02003 134 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02003 Pste-Chr1 6260549 6262499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02003 1 93 Single Myb Histone (SMH) Gene Family AT5G67580 74.194 4.22e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste1g02003 Myb_DNA-binding 1.4e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02003 1 6260549 6262499 Pste7g00906 7 8385343 8393253 PCT