Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01982 ATGATGTCTCCTTCTACTTCTCCTTCTCCTTCTCATTTTCATTCTCAGGCACCCCATTGGGCCCCAACTCCAACACCAACACCAACACCAATCATCAACAAGTCTTTGGTAGCTCCGGCGTCAAACTCCCCGGCGGTTGAATTCAGCCCGCCCTTGATAGCAATGGTGGTGGTGGTGGCGGCGGCATTTCTGATGGTTACCTACTCGAGGCTGATCGCCAGGCACCTGAGGGGGCCAATCGAGCGGGTGGTGGGGCGCTTCAGACGGCGGCGCTTTATAGCGTCGTCAGTAGGGGACCTGGAGTCGCTCCCATACGAATCAGCAGCGTTAGAGATGGTGTCTCCGTACGGTCTAGAAGAAACGGTGATAAAGACGATACCCTATTCGCTGTACAGAGGCAAATACGAGGCGCGTTTTGAAGAGTCAAGGAACGACTGCGCGGTATGCTTGGTGGAATTCGAAGACGAAGATTACGTGAGAACGCTTCCGGTTTGTTCTCACACCTTCCACTTGGAGTGCATCGACGCCTGGCTTCGCTCCCACGCAAACTGCCCCCTCTGCCGCGCCGGAGTTCTCTGCGCTGATTCACCTTTCACTCCCATGATGGCAGCCAGAATCAGACCAAGCCTGGACGACGAGGACGCAATTCTCCGCAGCATTAGCATTAGCATAGATCCTCTCCTGGACCCCTCCGCCCTCCCGGAGATCACTCCCTCCGTTGACGAGCACTCTCCGAGCACCCATTCCAGGGATTTTGTGCTCAAGAGGTCTTATTCTTTTGGGTTTGAAAGGACCCTGGCCTCCGAGAGGATGCTCATGGACCCCGCCACGGCCTCTCCCTGGCGATACAGGAGAGGCACTTCTAGTTTCTGGACCAAGAGGCCTTCACCCTTTGCTTCCTTGCCCAAGTCCAGGGTCTTTTCTTTTAGGTATTATAGAGGGATGAAATCACCCTTCTTTCGCCGCAGGGCATTTTTTCCCTTCTCCGAGTCCAGCCTCAGGTACGCCGCCGGTACCTCCTCTCGCCGCACCAAGTCCATCGCCAGTCCCATGTTTCTCCGCTCCTCTGGCCTCGCCGCCTTCTCCTCCAGCCGCCTCAGGTGCGGCGATCCCGAGGCGCTTCTTTCCCCCGACAGATTTAACCGCTCCAAATCATAA 1158 0.5622 MMSPSTSPSPSHFHSQAPHWAPTPTPTPTPIINKSLVAPASNSPAVEFSPPLIAMVVVVAAAFLMVTYSRLIARHLRGPIERVVGRFRRRRFIASSVGDLESLPYESAALEMVSPYGLEETVIKTIPYSLYRGKYEARFEESRNDCAVCLVEFEDEDYVRTLPVCSHTFHLECIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDEDAILRSISISIDPLLDPSALPEITPSVDEHSPSTHSRDFVLKRSYSFGFERTLASERMLMDPATASPWRYRRGTSSFWTKRPSPFASLPKSRVFSFRYYRGMKSPFFRRRAFFPFSESSLRYAAGTSSRRTKSIASPMFLRSSGLAAFSSSRLRCGDPEALLSPDRFNRSKS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01982 385 PANTHER RING-H2 FINGER PROTEIN ATL16 36 208 IPR044600 GO:0016567|GO:0016740
Pste1g01982 385 MobiDBLite consensus disorder prediction 1 26 - -
Pste1g01982 385 Pfam Ring finger domain 144 188 IPR001841 -
Pste1g01982 385 MobiDBLite consensus disorder prediction 1 20 - -
Pste1g01982 385 CDD RING-H2_EL5-like 145 188 - -
Pste1g01982 385 SMART ring_2 146 187 IPR001841 -
Pste1g01982 385 SUPERFAMILY RING/U-box 129 193 - -
Pste1g01982 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 192 IPR013083 -
Pste1g01982 385 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Pste1g01982 385 FunFam RING-H2 finger protein ATL65 111 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01982 Pste-Chr1 6178519 6179676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01982 41 382 C3H Transcription Factor Family AT3G18930 53.543 1.29e-102 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01982 1 6178519 6179676 Pste1g01982 1 6178519 6179676 ECH