Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01981 ATGAAGCCTACGAAACTCTGGTCGTTAACTCTGCGCCCACACTGCATGAACCCTGTAGCCTTAACACACAGAATCGTTGCAAGATTTTCTCCTGGCCCTGACAAAAGCAAAAGACAGAAGTTAACAAATCTATTTGCAATTACTGATCTTCCGAATATAGAGAGTGGAAAATATGGAAGTGTCACGAAGGACATAGAGGCCCTTGTAGCCCGAAAAATGCAGATACTTGGACCTTACTTTGCAAAGTATCCCAGACTTGTTAATCAATTGTTGAATGTGGTAACGGACCGTGATGAAGACACTTCTAAGGTCGAAGATCAAGCAGTTACTGGTGTGACACATCAAAATGTCATAGATTTGGAGGTAGAAAACACTGAGAATAATGTTAACGCAGCACCAGTTCCTATAGTGATTCACATTGATTCAGATGAGGAAGACGGTGGGGATAAACAAATTATTATTCCCTTTCATGAAGCTTCAGATGAGGAAGATGATAGAAATAAAAACTTTATTGTTCCCTTTCATGAAACTTCAGATAAGGAAGCTGATGGAGATAAAAAATCTATTGTTCCACTTCATGAAGTTGTGCTGCCGAGACTAGCTGCACCATCTCATGCATTGAAGATGATTGGGGACCATACTCCCATTCCTAACCATGTTGAAAGCAAAGATCTAAAAGTTCAGACAAGTATGGCTGAAAAGAGTAACACTAGGGGAGATAAAGGGGTTTATATTGGTGTACAAGAGGAAGAGGATCATCCGATTGATACTGAAGATGATGATGGTCTAGAAAATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTCCTGTGAATCCTCTGCCAGAAGAAGTACAAAAAGACGAGGACTGTGATCATTCTTTTCTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGAATTATTGACCGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCATCTGATTCGCGGAATACCAAAGAAAAAGTAGATGTATTTGGAATGAATGTCGCAAAAGATGATTTCATGATAACTGAAATTTCAGCGCATCCTAGACACATGAAACTGATGAAACCCCATCAACTTGAAGGGTTCAATTTTCTTGTTAGAAATCTTGTGGGCGACCATCCCGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATTAGTTTCATGCAAAGTTTTCTAGGCAAGCATCCTAATGCAAGACCCTTAGTGGTGCTTCCTAAAGGAATATTATCAACATGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATACCCCTATATGACTTTTACACACTGAAGGCGGATACTAGAAGTCAGCAACTACAAGTGTTGAAGAAATGGATGGAGCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGACAGCGGGATCAACAGTACATCTTCATCTTGCCGAGAGATTTTACTCAAGGTTCCTTCAATTCTAATTTTAGATGAGGGACATAATCCAAGGAATGAAAACACAGATATGGTACAATCTCTTGCAGAAGTTCAAACTCCTAGAAAAGTTGTACTGTCAGGAACACTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGGCCAAAATTTTTGAAGACAGAGACATCTAAATCTATTGTCAGGCGCATTAATAGCAGAGTTCATATAATCGGTGTCAAAAGCTTCTATGATCGGGTTGAAAACACTTTGCAGGACACAGATTTTAAAAGGAAAGTGGCCATCATACGAGATTTACGTGAGATGACAAGCAATGTCCTTCACTATTATAAAGGGGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTACTCAATCTTTGCCCTAGACAGAAGATTGAAGTTGAAAAGTTGAAAAAGTTTAGCAAGTTTAAGATATCTTCTGTAGGCAGTGCTGTCTATTTGCACCCTAAACTCAAATATTTAGCTGAAAGTGAAAATGGTATATCCACTAATTTGATTCATGATGTGATAGATAAATTGGATGTGAAAGATGGCGTGAAGTCCAAATTCTTTTGGAACATGCTAAATTTGTGTGAATCGGCTGGGGAGAAACTTCTAGTATTTAGTCAATACTTGCTACCTTTGAAATATTTAGAAATGTTAACCATGAAATGGAAAGGCTGGAGTCTAGGAAGACAAATCTTTGTAATCTCAGGAGAATCAAGCTCTGAGCAACGAGAATGGTCAATGGAAAGATTTAACAATTCTCCCGATGCCAAAATTTTCTTTGGCTCGATCAAGGCTTGTGGAGAAGGCATATCATTGGTTGGGGCATCTCGCATAATCATTTTAGATGTTCATCTCAATCCTTCTGTTACTCGCCAAGCTATTGGTCGTGCATTTAGACCAGGCCAGAAAAAGAAAGTTTTTGTATATCGATTGGTATGTGCTGATTCTCCTGAAGTGGAAGATCATGGTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTACTGTGGTGATCGAGCTTTTCATGTTCAGGAAGTAGGGGTGAAAGAGTGTGGTGATCTATTTCTTGAAAGCCCACTGTTTGGGGAGGATCTGAAGGCTTTGTATAAAAGGTAG 2706 0.3888 MKPTKLWSLTLRPHCMNPVALTHRIVARFSPGPDKSKRQKLTNLFAITDLPNIESGKYGSVTKDIEALVARKMQILGPYFAKYPRLVNQLLNVVTDRDEDTSKVEDQAVTGVTHQNVIDLEVENTENNVNAAPVPIVIHIDSDEEDGGDKQIIIPFHEASDEEDDRNKNFIVPFHETSDKEADGDKKSIVPLHEVVLPRLAAPSHALKMIGDHTPIPNHVESKDLKVQTSMAEKSNTRGDKGVYIGVQEEEDHPIDTEDDDGLENIWKEMSMAIECSKDVPVNPLPEEVQKDEDCDHSFLLKDDLGYVCRVCGIIDRGIETIFEFQYKVKRSTRTYASDSRNTKEKVDVFGMNVAKDDFMITEISAHPRHMKLMKPHQLEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKHPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTLKADTRSQQLQVLKKWMEHKSILFLGYKQFSSIVCDSGINSTSSSCREILLKVPSILILDEGHNPRNENTDMVQSLAEVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKTETSKSIVRRINSRVHIIGVKSFYDRVENTLQDTDFKRKVAIIRDLREMTSNVLHYYKGDFLDELPGLVDFTVVLNLCPRQKIEVEKLKKFSKFKISSVGSAVYLHPKLKYLAESENGISTNLIHDVIDKLDVKDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLEMLTMKWKGWSLGRQIFVISGESSSEQREWSMERFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVCADSPEVEDHGTCFKKELISKMWFEWNEYCGDRAFHVQEVGVKECGDLFLESPLFGEDLKALYKR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01981 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 877 IPR001650 -
Pste1g01981 901 SMART ultradead3 370 580 IPR014001 -
Pste1g01981 901 Pfam Helicase conserved C-terminal domain 719 824 IPR001650 -
Pste1g01981 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 863 IPR027417 -
Pste1g01981 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 567 IPR014001 -
Pste1g01981 901 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 49 900 IPR044567 GO:0080188
Pste1g01981 901 SMART helicmild6 740 825 IPR001650 -
Pste1g01981 901 Gene3D - 641 886 IPR027417 -
Pste1g01981 901 Pfam SNF2-related domain 394 575 IPR000330 GO:0005524|GO:0140658
Pste1g01981 901 Gene3D - 341 588 IPR038718 -
Pste1g01981 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 589 IPR027417 -
Pste1g01981 901 CDD SF2_C_SNF 714 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01981 Pste-Chr1 6177768 6184725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01981 722 842 RAD5 or RAD16-like Gene Family AT5G43530 36.364 7.39e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste1g01981 SNF2_N 8.5e-20 CL0023