Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01960 CGATGGAAAGCTGCACCGGCAACAGCAGTGACAGCAACAATTATTGGAGAGCAGAAGAAGCCATTGGTGGCAATGCTGAAGCTCTTCAAGCCCTTAGAGAACTCATCATTTTCCCTCTTCACTTCTCTCACCAAGCACAGAAGCTTGGGCTTAAGTGGCCAAGAGGATTGCTGCTATATGGTCCACCAGGCACTGGAAAGACAAGTTTAGTACGAGCAGTTGTTCGGGAGTGCGGGGCACATTTGACAATTATCAGTCCACATTCTGTTCATAGAGCACATGCAGGTGAAAGTGAGAGAATTCTCCGTGAGGCTTTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGTCATCGGTTATCTTTATAGATGAAATAGACGCACTCTGTGCTCGCCGAGACTCCAAAAGGGAGCAAGATGTCCGAGTTGCTTCCCAACTCTTTACCCTGATGGATTCAAATAAACCGACCTTTTCTACACCAGGTGTCATTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCGGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTTCCAAATGAAGAGGACCGTTTTCAAATTCTGAAGTTGTATACAAAGACGATTCCCTTGGATTCCAGTGTTGACTTAAAGTATATTGCTGCATCATGCAATGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAATTAAAAGATCCTCAAGTACAAAAGATGCTAGTAATTTCAGTCTAACAATGGAAGATTGGAAGAATGCAAGGTCTGTTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGAGTTGGGAAGACATTGGTGGATTAAAAGATTTGAAGAAAAAACTCCAGCAAGCTGTCGAGTGGCCCATTAAGCATTCTGCTGCATTTTCAAGATTGGGAATATCCCCTGTGCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCCCAAGCTTCTTTCTTTTCCTTAAGTGGTGCAGAATTATATTCGATGTATGTTGGAGAGGGGGAAGCTTTGCTTCGTAAAACTTTTCAGAGAGCACGCCTTGCGGCACCCAGTATAATATTCTTTGATGAGGCTGACGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGCAATAGTGCCACAGTTGGAGAGAGACTTTTATCCACTCTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCATATGCAATTGATGCTGCACTAATGCGTCCTGGGCGTTTTGATCTGGTTCTATATGTACCACCACCTGATTTGGATGCTCGATATGAGATACTTTGTGTTCATACGCGTAAGATGAAAACAGGGAATGATGTTGATCTCAGAAGGCTAGCAGAAGACACAGAGCTCTTCACAGGTGCTGAACTGGAGGGGTTATGCAAGGAAAGTGGAATTGTAGCTCTAAGGGAAGATATATCTGCCACTGTTGTTTGTGACCGCCATTTCCAGGTTGCAAAGAGTTCTCTAAAACCAGCATTAACAAAAGTGGAAATTGACTTGTACTCGTCCTTCATGAAGACGTCATCCCGAGCCTGGCCTAGCCACATTGAAGTAGGTTTGAAACCAGACAAAAGCAAAAAGAGTATGTTGGTTCCTTTTTCTTTGGTCAAAATGGGACTCGTCAGCTGTTTGTTACTTGCTGCTGCTGCTGAATACTATATCATGTATGGAGACCCAAGTGTACATGATATAGCTACTTGAAGAGCATATTCATTTTGTATTTTTGGATCAATCCATTTTTTACTGTGTAGGTATAGCATTTGTGAGTAAAATTTTGAGAATAGGTTTTCTTTTGTTAAATATATGTTATTTGTAAGATGTTTATTCCTGAGGAATTATTAGATGGGA 1976 0.4286 MESCTGNSSDSNNYWRAEEAIGGNAEALQALRELIIFPLHFSHQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKSSVIFIDEIDALCARRDSKREQDVRVASQLFTLMDSNKPTFSTPGVIVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKTIPLDSSVDLKYIAASCNGYVGADLEALCREATMIAIKRSSSTKDASNFSLTMEDWKNARSVVGPSITRGVTVEIPKVSWEDIGGLKDLKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLDARYEILCVHTRKMKTGNDVDLRRLAEDTELFTGAELEGLCKESGIVALREDISATVVCDRHFQVAKSSLKPALTKVEIDLYSSFMKTSSRAWPSHIEVGLKPDKSKKSMLVPFSLVKMGLVSCLLLAAAAEYYIMYGDPSVHDIAT 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01960 608 CDD RecA-like_CDC48_NLV2_r1-like 20 190 - -
Pste1g01960 608 FunFam Cell division control protein 48 homolog B 193 274 - -
Pste1g01960 608 ProSitePatterns AAA-protein family signature. 428 446 IPR003960 GO:0005524|GO:0016887
Pste1g01960 608 PANTHER AAA-FAMILY ATPASE 18 549 - -
Pste1g01960 608 SMART AAA_5 321 460 IPR003593 GO:0016887
Pste1g01960 608 SMART AAA_5 52 194 IPR003593 GO:0016887
Pste1g01960 608 Pfam AAA+ lid domain 214 256 IPR041569 -
Pste1g01960 608 Pfam AAA+ lid domain 480 525 IPR041569 -
Pste1g01960 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 274 IPR027417 -
Pste1g01960 608 Gene3D - 460 541 - -
Pste1g01960 608 Gene3D - 194 274 - -
Pste1g01960 608 FunFam Cell division control protein 48-B-like protein 275 459 - -
Pste1g01960 608 CDD RecA-like_CDC48_r2-like 296 456 - -
Pste1g01960 608 FunFam Cell division control protein 48 homolog B 13 191 - -
Pste1g01960 608 FunFam spermatogenesis-associated protein 5-like protein 1 459 545 - -
Pste1g01960 608 Gene3D - 11 193 IPR027417 -
Pste1g01960 608 Gene3D - 275 459 IPR027417 -
Pste1g01960 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 543 IPR027417 -
Pste1g01960 608 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 60 79 - -
Pste1g01960 608 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 406 425 - -
Pste1g01960 608 Pfam ATPase family associated with various cellular activities (AAA) 325 457 IPR003959 GO:0005524|GO:0016887
Pste1g01960 608 Pfam ATPase family associated with various cellular activities (AAA) 56 190 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01960 Pste-Chr1 6108086 6116421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01960 256 582 Calmodulin-binding Proteins AT3G56690 43.030 1.29e-82 278