Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01958 ATGCCGATGTTTCAGCCTTGTCGGAAGAACATGGTTGCCGGCTATGAGGGTGGCGGCGACGGGCAGATTCTAGATCTGGCCACCGCCGTTAAGGACGGCGTTTTAGGCGGCGTTGACGGTGGTATTGTGGGAACTGGGGTTGGTGAAAAGGTGGATCTGGGGAAGATGATTGAGGAGCTGGAGTTATGCGAAGTGCCGACCGTGTTCATTTGCCCAATCTCTTTGGAACCAATGCAAGACCCAGTTACCCTTTGCACTGGCCAAACCTACGAGAGGTCCAACATTCTTAAATGGTTCAACTTGGGGCACTTCACCTGCCCCACCACGATGCAGGAGCTCTGGGACGATTCCGTCACTCCAAACACAACCTTGTATAGGCTCATCCACACGTGGTTCTCGCAGAAGTACTTGCTAATGAAGAAGAGGTCAGAGGATGTTCAGGGAAGGGCTTCTGAACTTCTTGAGACCCTCAAGAAGGTGAAGGGTCAGACTCGTGTTCAGGCACTTAAGGAGCTTCATCAATTAGTTTCTTCTCACGCCACTGCACGCAAGACTGTGATTGATGAAGGTGGAGTGTCTGTTGTGTCTTCCTTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGGTATTCTTGTTAGTTTGACTCTTGATTCGGAATCTAGGAAGAATCTCTTGCAGCCTGCTAAGATTTCCTTGATGGTGGACATCTTGAATGAGGGTTCGATTGAAACTAAGATCAATTGCACGCGGCTGATTGAATCTTTGATTGAGGGGAAGGATTTTCGGTCAGAGGTTATCTCCAGTCACAGCCTCCTGGTTGGGTTGATGAGGCTTGTTAAAGATAAGAGGCACAGCAATGGAGTGTGTCCTGGGCTGAGTCTTCTCAGGTCAATATGTTTGCATAAGGAAGTTAGGAGCTTGCTGGTGAGCATTGGGGCTGTTTCCCAGTTGGTTGAATTGTTATCTGGAATGGAGCCCGAATGTTTGGAATTGGCCCTTTGTGTTTTGGATGCATTGGCGTCTATACCCGAAGGCAGGGTGGCTTTGAAGGATTGTTCTAACACCATACCCATCATGGTGAAACTGTTGATGAGGATCTCAGAAAACTGCACTCAGTATGCTTTGTCAATTCTATGGTCTGTCTGCAAGCTTGCGCCTGAGGAGTGCTCCTCCATTGCGGTTGATGCAGGGCTTGCTGCCAAACTCCTACTTGTGATTCAAAGTGGTTGCAATCCCATATTGAAACAACAGTCTGCTGAGCTTTTAAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATAA 1350 0.4778 MPMFQPCRKNMVAGYEGGGDGQILDLATAVKDGVLGGVDGGIVGTGVGEKVDLGKMIEELELCEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVTPNTTLYRLIHTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQTRVQALKELHQLVSSHATARKTVIDEGGVSVVSSLLGPFTSHAVGSEVIGILVSLTLDSESRKNLLQPAKISLMVDILNEGSIETKINCTRLIESLIEGKDFRSEVISSHSLLVGLMRLVKDKRHSNGVCPGLSLLRSICLHKEVRSLLVSIGAVSQLVELLSGMEPECLELALCVLDALASIPEGRVALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01958 449 CDD RING-Ubox_PUB 66 118 IPR045210 -
Pste1g01958 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Pste1g01958 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Pste1g01958 449 SUPERFAMILY RING/U-box 59 135 - -
Pste1g01958 449 Gene3D - 138 444 IPR011989 -
Pste1g01958 449 PANTHER WDSAM1 PROTEIN 58 435 IPR045185 GO:0061630
Pste1g01958 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Pste1g01958 449 SUPERFAMILY ARM repeat 147 434 IPR016024 -
Pste1g01958 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01958 Pste-Chr1 6101785 6103134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01958 1 449 U-box Gene Family AT3G49810 74.610 0.0 670
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01958 1 6101785 6103134 Pste1g01958 1 6101785 6103134 ECH