Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01955 ATGATTTTGGTAAGGCTTTCATCATGTGCAGATGTGCATTACTACGTAGAGGAGCCTGGTTTTGGGAGTGGAGCACAAGGTGGTATGCCCATAGGATCTCCAGCAGAACCGGCGCAGCACATGAGCACTGGTCAGTTAGTTTTTACCTACGAGAAGATTGCAGAGATCACTAACGGGTTTTCTAGTGAAAACATAATAGGAGAGGGGGGATTTGGGTATGTTTACAAGGCTTCTATGCCTGATGGTAGAGTGGGGGCACTTAAGATGTTGAAGGCTGGTAGTGGACAGGGAGAAAGGGAGTTCAGGGCCGAGGTGGACATTATCAGCCGTATCCATCATCGACATTTGGTGTCCTTAATTGGTTATTGCATATCTGAACAGCAAAGAGTGCTTATCTATGAGTTCGTTCCTAATGGGAATCTCAATCAGCACTTGCATGGAAGTGAATGGCCAATTTTGGATTGGTCCAAGAGGATGAAGACAGCAATTGGCGCCGCAAGAGGACTGGCATATCTCCATGATGGATGCAACCCAAAGATTATTCACAGAGATATTAAATCAGCAAACATACTTTTGGATAATGATTATGAGGCACAGGTAGCAGACTTTGGACTTGCCAGGCTAACCGACGATGCTAATACTCACGTATCTACTAGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCTACAAGTGGAAAATTAACAGATCGATCAGATGTTTTCTCTTTTGGAGTTGTCCTCCTCGAGCTTATTACTGGAAGGAAACCTGTCGATACAATGCAGCCCATAGGAGAAGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACAGGTGACTTTAGTAAACTAGTGGACCCTAGGCTTGAAGGGCAATATGTGGACACTGAAATGTTCAAAATGATTGAGGCAGCTGCAGCATGTGTTCGCCATTCTGCTCCAAAACGACCTCGAATGGTTCAGGTGGCAAGAGCCTTAGACACTGGCAATCAACTATATGATCTATCTAATGGGGTGAAATATGGTCAGAGTACTGTTTATGATTCTGGCCAGTATAATGAAGACATTACAAGATTTAGAAGGATGGTTAATGGTAGCTTTGATGATTCTGACTTTGATATGTACAGTTCGGATTATCGTTCAGCTGTTTCAAGAGAGCAGTCTACATCAAAACATTCAAGGTTTGCAAATAGTACA 1218 0.4409 MILVRLSSCADVHYYVEEPGFGSGAQGGMPIGSPAEPAQHMSTGQLVFTYEKIAEITNGFSSENIIGEGGFGYVYKASMPDGRVGALKMLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGYCISEQQRVLIYEFVPNGNLNQHLHGSEWPILDWSKRMKTAIGAARGLAYLHDGCNPKIIHRDIKSANILLDNDYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDTMQPIGEESLVEWARPLLLRAIETGDFSKLVDPRLEGQYVDTEMFKMIEAAAACVRHSAPKRPRMVQVARALDTGNQLYDLSNGVKYGQSTVYDSGQYNEDITRFRRMVNGSFDDSDFDMYSSDYRSAVSREQSTSKHSRFANST 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01955 406 FunFam Proline-rich receptor-like protein kinase PERK8 33 135 - -
Pste1g01955 406 Pfam Protein tyrosine and serine/threonine kinase 63 280 IPR001245 GO:0004672|GO:0006468
Pste1g01955 406 Gene3D Transferase(Phosphotransferase) domain 1 136 348 - -
Pste1g01955 406 FunFam proline-rich receptor-like protein kinase PERK8 136 348 - -
Pste1g01955 406 ProSiteProfiles Protein kinase domain profile. 60 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g01955 406 Gene3D Phosphorylase Kinase; domain 1 32 135 - -
Pste1g01955 406 SUPERFAMILY Protein kinase-like (PK-like) 41 333 IPR011009 -
Pste1g01955 406 SMART serkin_6 60 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g01955 406 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 43 382 IPR047117 -
Pste1g01955 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01955 Pste-Chr1 6088157 6091486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01955 21 402 Trihelix Transcription Factor Family AT1G70460 66.580 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pste1g01955 PK_Tyr_Ser-Thr 2.9e-46 CL0016