Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01950 AAAGCAAGTGTGAAAATTTGCAAAGGAAGAAGGAAAAGGTTGTTTGTCTCTCAATGTGTGTGTGTTGTTGGTGCGTCGAGTGGCGTGCGTGTAGCTGCGCTCTCTCTTGCCGGCGCTCTCGTCGGAATTTCCGATTACGCCAGCAGCGACGACGATTACCATTACGACTCCGATCAGGAGGACTCCGTCGAGGCTTACGAAAACGATGAGGATTACGCGTTGCTCTCTTCCAAGGGTCCCACTACTAAGGTTATCACGAAGGAATCACTGCTAGCTGCACAGAAGGAAGATTTGCGCCGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGTACACTGCTTATTTTTCATCGTTGGGATGTGGAGAAGCTATTTGCAGTTTTAGTAGACAAGGGGAGATCATTTCTCTTTGCGGAAGCTGGTGTCAGTGTGGATGAACATCGTGGTTCTGACTCATCCGTCCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTCCTAGTTGGATTGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGAACACAAGTGCAATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTACTCAGTAGGAAGCACCCTGATATGGCAGAGAAATATGAACGTTTTTTGCTTGAATCTTATATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAACTGTGTGAGGTAGAATGTTCGTGTGGTTTACAATTTTGTTTTAGGTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAATTGGTTGTGTGGTGGGGCTACTGGTCGAGAGCATACTTGGTCTAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCTGAAAGGGCAAAGAGGGATCTATATCGGTATATGCACTATCATAATCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAAATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCTAGACTTTTCAGATCTAGGAGAGTACTATCCTATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAACTTGAGGCAAATGTTGAAAAACTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGGATGCAGATTCTCAACCTATCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAGTGCATTGAGAATGATTTGTTGGGTTCTCTTCATCTTGGCATTCACAGTATTGCTCCTTACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATAATACTGGTGTAACAGCAGAACTTGATCGGCCTTCTGGATCAGGGAGTTCAGATGATAGTGGATGCTCTTCTCGTAAACGTGCTAGAAAAGAGGGTCTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGACTTTGAAGGACAACTTATATACGTACAGGCGTACAGGTCTAACATAAATTGCTTTGCTGCCTTTGGAAGGAATTAATCTTTTTGGATCTCACACCCCATTTGCTTTCATATCTTTCTTTTAGGCATGTCTCTGCGGAGATATGTTTCCAAAGTTTCTTATTCCTATGCCATCACCTTTCTTTTAGAAATCCTAGCGCTGTATATAGATAGCCTTGGGGCATTTATTTGCTAGTAGTTATATGTAAATGGGCTACCTGGGTTTCTAGCAACACCCTTGAGGACAACTTCTAGGATGCTTTTATTCCTATATTATGGAGTTATAGGTGGAGGTAACTTCACTGATTTTTCTTCTTTCATA 2107 0.4124 KASVKICKGRRKRLFVSQCVCVVGASSGVRVAALSLAGALVGISDYASSDDDYHYDSDQEDSVEAYENDEDYALLSSKGPTTKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVLVDKGRSFLFAEAGVSVDEHRGSDSSVPSTVMCYICMEDVPSWIEHFIVKINEGQSKRIRCMEHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPNWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNNTGVTAELDRPSGSGSSDDSGCSSRKRARKEGLGGGFFDLNLPAEFVDRN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01950 582 CDD BRcat_RBR_ANKIB1 224 288 - -
Pste1g01950 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 232 IPR013083 -
Pste1g01950 582 Gene3D - 275 308 - -
Pste1g01950 582 Gene3D - 309 499 - -
Pste1g01950 582 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 400 IPR031127 GO:0004842|GO:0016567
Pste1g01950 582 Pfam IBR domain, a half RING-finger domain 217 279 IPR002867 GO:0008270
Pste1g01950 582 ProSiteProfiles TRIAD supradomain profile. 138 357 IPR044066 -
Pste1g01950 582 SMART ibrneu5 217 279 IPR002867 GO:0008270
Pste1g01950 582 Pfam Ariadne domain 333 582 IPR045840 -
Pste1g01950 582 SUPERFAMILY RING/U-box 158 229 - -
Pste1g01950 582 SUPERFAMILY RING/U-box 217 285 - -
Pste1g01950 582 MobiDBLite consensus disorder prediction 537 553 - -
Pste1g01950 582 MobiDBLite consensus disorder prediction 537 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01950 Pste-Chr1 6070280 6074315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01950 102 557 ARIADNE family AT2G16090 63.928 0.0 636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01950 1 6070280 6074315 Pste1g01950 1 6070280 6074315 ECH