Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01933 ATGACTGCGCCACCGACCAAGTACACTCACCACACCAAACTACTCATAGCCCGGGAAGAAGAACCACCCAAACACAAGCACCCATATCCCAGACTCGTCAGAATCACCGTCACGGACACCGACGCCACTGACTCCTCCAGCGACGAAGAACACTCTTCCACACCCCATCGACACAGAAAGTTCGTCAACGAGATTTCCATCGAGAGCGAGAACGACGGCGTCGTTTCCAGAAAGAGAATCCGAAAAACCAGAGCTGCAGACACTCGGCGCGTGTCCCACGGCAAGAAATTCCGCGGAGTGAGACAAAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGACCCGTCGCGACGTGTCCGGTTATGGTTGGGTACCTACGACACTGCTGAAGAAGCTGCTTTGGTCTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAGCCCCTCCTGCCACGTGGCAGAACAAAGACCCGGCGCCGTTGCTGAACGGTTACGCCTCGGGAGAAGAAACTCGAAGCAAGAACCTCTTCTCTCCCACTTCGGTGCTTCACTGTTGCTCCTTGTCCGAGGAAGCTGAGTCCGTAAACGACGAGTGCTCCTGCTTCTCCCAGAATTCCAAGCCCAAAGCCCAGTCACCATTTCCGACCGAAATACAATTTGACTTCCGAGGTTGTTCGCCCGCGCCGGACACTGTGTTGTTCTGCGAGGATGATTATTTCGGTTTCAATAGTTGGCATATGGAAAAAAATCGTGATTTTTTCCAAGATATCGATGATTTGTTTCTCTCCGATCCCCTTCTTGCTCTCTGA 828 0.5374 MTAPPTKYTHHTKLLIAREEEPPKHKHPYPRLVRITVTDTDATDSSSDEEHSSTPHRHRKFVNEISIESENDGVVSRKRIRKTRAADTRRVSHGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFIAPPATWQNKDPAPLLNGYASGEETRSKNLFSPTSVLHCCSLSEEAESVNDECSCFSQNSKPKAQSPFPTEIQFDFRGCSPAPDTVLFCEDDYFGFNSWHMEKNRDFFQDIDDLFLSDPLLAL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01933 275 SUPERFAMILY DNA-binding domain 96 152 IPR016177 GO:0003677
Pste1g01933 275 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Pste1g01933 275 PIRSF PTI6 1 202 IPR017392 GO:0003700
Pste1g01933 275 PIRSF PTI6 222 270 IPR017392 GO:0003700
Pste1g01933 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 212 - -
Pste1g01933 275 MobiDBLite consensus disorder prediction 1 58 - -
Pste1g01933 275 CDD AP2 95 152 IPR001471 GO:0003700|GO:0006355
Pste1g01933 275 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Pste1g01933 275 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Pste1g01933 275 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Pste1g01933 275 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Pste1g01933 275 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Pste1g01933 275 MobiDBLite consensus disorder prediction 44 58 - -
Pste1g01933 275 MobiDBLite consensus disorder prediction 12 28 - -
Pste1g01933 275 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01933 Pste-Chr1 6011478 6012305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01933 24 275 AP2-EREBP Transcription Factor Family AT4G11140 39.597 1.27e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste1g01933 AP2 1.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01933 1 6011478 6012305 Pste1g01933 1 6011478 6012305 ECH
Pste1g01933 1 6011478 6012305 Pste3g00878 3 5453220 5454101 PCT