Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01920 ATGTTGGAGTGCTATCCGGCAATGAAAAGCGCCGTAAGTGTCCCGTGCAGCAGTTTGTCAATGGTGGTAACAGTAAGATGTGGTCACTGTACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCCCTTAGTCATCTTGAGCCAAAAGAAGCTGGTTCAGACGAAGATGTTAACAAGACTTTGAACAGCCATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAAGATGCAATCCCAATGAGTAACTTTGTGAATAAACCCCCTGAGAAGAGACAACGAATACCGTCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGACTGAGAATCCTGACATGGCCCACAAGGAAGCTTTTAGTACTGCTGCAAAAAATTGGGCCAATTTCCCCCCTACTCAACGCAAAGGAGATGATGAGAACTGTAGCCAGATTGATCAACTTGTGGATCTTGATTCCCAACTGGACCCTCCTGATGCTGAGGTCAATGAAGAAGAAGAAGAAGATCAAGGTTTCCGTAGAACAAAGGTCCCAAGGAATTCCATCTTGGAAAGGACGACATTTGAGTGA 609 0.4335 MLECYPAMKSAVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKEAGSDEDVNKTLNSHNASMMTYSDCEEEDAIPMSNFVNKPPEKRQRIPSAYNCFIKEEIKRLKTENPDMAHKEAFSTAAKNWANFPPTQRKGDDENCSQIDQLVDLDSQLDPPDAEVNEEEEEDQGFRRTKVPRNSILERTTFE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01920 202 Gene3D High mobility group box domain 93 183 IPR036910 -
Pste1g01920 202 Pfam YABBY protein 11 146 IPR006780 GO:0007275
Pste1g01920 202 PANTHER PROTEIN YABBY 6-RELATED 11 154 IPR006780 GO:0007275
Pste1g01920 202 SUPERFAMILY HMG-box 93 149 IPR036910 -
Pste1g01920 202 MobiDBLite consensus disorder prediction 164 202 - -
Pste1g01920 202 CDD HMG-box_SF 106 149 - -
Pste1g01920 202 FunFam Axial regulator YABBY 4 92 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01920 Pste-Chr1 5960417 5962504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01920 12 202 C2C2-YABBY Transcription Factor Family AT1G23420 52.451 1.75e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste1g01920 YABBY 4.3e-51 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01920 1 5960417 5962504 Pste1g01920 1 5960417 5962504 ECH