Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01890 CCTATAGGAAATGGCGATACCATTAACATCATCAACTATCAAGATAGCTGGTTAGGCTTCTCCCTCTCTCAACAAATGAACATAGGTATTCCTTCACACCCTAATCCGACACAGCCTTCATCCACTGCTGTTGAAATAGTTCCACCAAGCTTTTACCATCACACACCTTTCCATAACGTTGGCCTTTACTATGGACTGGAAGGTGAACCCGTTGGCACGAGTTCATCCTTGGCTATGATGCCCCTTAAATCCAATGCCTCTCTCTATGGAATAGAAGCTCTAAATAGATCACAGGCACAAGCAATACATCCGAGCTTAAATAGTATGCTTTGCAACCAAATCTTATGCCATGGACAAAACAACCCAAACAATCACGTTCAAGAGAACATCAACCAGCAACAACTATCATATTACTCTAGCTTAAGAAACCATGATGTGATTTTAGAAGGGTCCAAGCACCAGCTCCCATGTATAGCTGAGGATGAAATTCCTGGTCTCAAGAGTTGGTTCTCTAGGGACTTTCCTGCTAGCCATGCACAAGAGTCAAGCATGAGTGTTCCTGTGGAGAATAATAGAGGCGAATCCCGATCCATTGCATCAATAACATATGGGGATTTACATTCATTGAATATGTCTGCGACTCCTACCTCCCGATCAAGCTGGGTTACAAGTTCATCTGCTCTAACTGATAACCTTGCTACTGATACGAAGAAAAGGAGGTTTGAAATGGTGGACCATAATCAGAAGCAAATAGTTCATAGAAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGGGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGGGGGCTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCGCATATAAATTTCCCATTGGAAAATTATCGAAACGAACTTGAGGAAATGAAAAATATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGTCTCACAGGCTAGCATTTACACAGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTCTATCTTGGAACATTCAGTACCCAAGAGGAAGCAGCTGAAGCGTACGACATAGCAGCTATAAAATTTCGAGGCGTTAATGCTGTTACTAACTTTGATACAACAAGATATGACGTGGAAAAAATCATGGCAAGCAGTAACCTTCTTAGCAGTGAACAAGCTAAGAGGAACAGAGAGAAAGATGATGGAACTAGAAACGAGGCTATTGTTAACCAAAAACCTTATACATATGACCACACTAAAGAAACCATTCTAATGCAGAAAAGCTGCAAGATGGTTCTCTATCCATCCTCTGAACAGCTTGACCAGAATCCACCAAGAATTGAGACTTGTAAAACTCGGTCCTGCTCAGCAGCCTTAGATAACATACTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACAGTTATCAAATACAAATACTTCTTCTGTGGTCAAAAGTTTGAGTACCTCAAGAGAAGAGAGCCCAGATAAGACAAGTTTGCCAATTCTCTTTGGAATGCCTTCAACAGTGTCTAAGTTAATGGCTAACATCCCAACAAGTAACGTGGATTCTTGGGCTCTATCTTCCAATCTCAGGCCTGCGCTTTCTTTGCCTCCGATGCCAATTTTTGCCGCTTGGACCGATGCGTAA 1833 0.4261 PIGNGDTINIINYQDSWLGFSLSQQMNIGIPSHPNPTQPSSTAVEIVPPSFYHHTPFHNVGLYYGLEGEPVGTSSSLAMMPLKSNASLYGIEALNRSQAQAIHPSLNSMLCNQILCHGQNNPNNHVQENINQQQLSYYSSLRNHDVILEGSKHQLPCIAEDEIPGLKSWFSRDFPASHAQESSMSVPVENNRGESRSIASITYGDLHSLNMSATPTSRSSWVTSSSALTDNLATDTKKRRFEMVDHNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYRNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRSHRLAFTQHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDTTRYDVEKIMASSNLLSSEQAKRNREKDDGTRNEAIVNQKPYTYDHTKETILMQKSCKMVLYPSSEQLDQNPPRIETCKTRSCSAALDNILHQEVEESSNMGTQLSNTNTSSVVKSLSTSREESPDKTSLPILFGMPSTVSKLMANIPTSNVDSWALSSNLRPALSLPPMPIFAAWTDA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01890 610 CDD AP2 265 329 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 FunFam AP2-like ethylene-responsive transcription factor ANT 265 331 - -
Pste1g01890 610 CDD AP2 364 433 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 Gene3D AP2/ERF domain 365 433 IPR036955 GO:0003700|GO:0006355
Pste1g01890 610 Gene3D AP2/ERF domain 265 331 IPR036955 GO:0003700|GO:0006355
Pste1g01890 610 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 213 513 - -
Pste1g01890 610 SUPERFAMILY DNA-binding domain 265 331 IPR016177 GO:0003677
Pste1g01890 610 ProSiteProfiles AP2/ERF domain profile. 365 431 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 SUPERFAMILY DNA-binding domain 380 432 IPR016177 GO:0003677
Pste1g01890 610 ProSiteProfiles AP2/ERF domain profile. 266 329 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 SMART rav1_2 365 437 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 SMART rav1_2 266 335 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 PRINTS Ethylene responsive element binding protein signature 413 433 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 Pfam AP2 domain 379 423 IPR001471 GO:0003700|GO:0006355
Pste1g01890 610 Pfam AP2 domain 266 321 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01890 Pste-Chr1 5844502 5847773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01890 346 610 AP2-EREBP Transcription Factor Family AT4G37750 25.497 9.45e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste1g01890 AP2 2.5e-06 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01890 1 5844502 5847773 Pste7g00850 7 7922317 7926235 PCT