Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01887 ATGCAAGAAGCAAACTCAAACTCACAGCTTCAACTGGAAGACGCTGCTAATATTGGGTCGTCGCTATCGAAGCTGATACTTACAAGTGGTACAAACACACTTGACTCAATCTTCTCGAATTGCCCCCCAACAAATGGAAGCCTCACGAGAAACAGTGTGTTGGATTATTTAGAACCCTTTGGGTTTGAACCATTAGGGTCTTCGGTGTACATCAGGCAAAGGGACATCCTCCAAAAGTTGTACCAAGAAAGCCGAGGAAACGGAAACGGAAACAGAAACGAGAATGGGTGTTTGGTTCCAAGTTCGTTGGGGAACACGAGCTCCACCTCGTTTTACGCTTTGAGCAAGCCTTGCAAGAAGAAGCTGTATAGGGGAGTGAGGCAGAGACACTGGGGAAAATGGGTGGCGGAGATTAGACTCCCTCAGAACAGGATGCGAGTGTGGTTGGGAACCTATGACACAGCCGAAGCTGCAGCTTATGCCTACGACCGCGCCGCGTATAAGCTACGTGGAGAGTACGCGCGTTTGAATTTCCCCAATCTCAAGGACCCCACCAAGCTTGGCTTCGGCGATTCCGCCAGATTGAACGCCTTGAAGACCGCCGTGGACGCCAAAATTCAAGCCATATGTCAAAAGGTGAAAAGAGAGAGAGCCAAAAAGAACGCCTCAAAGAAGCTTTGCCTTTCTTCCGACAACGCTAACCGCGCCCAGAGCATCACCTCTTCTTCCTCGCCGCCCTCTGTTTTTCCCGACAACGACCTGTTTCCAACAGAGGATGTCCTCTGGAAGGGCGACCAATCTTCCACCTCCTCGGAATGTCCGAACATGGCCACAGACCAAAATGAGTTGTTCGATGGATGTTCTCTGGCCCGACTCCCTTCCTTCGACCCAGACTTAATTTGGGAGGTTCTCGCCGTTTAA 921 0.5049 MQEANSNSQLQLEDAANIGSSLSKLILTSGTNTLDSIFSNCPPTNGSLTRNSVLDYLEPFGFEPLGSSVYIRQRDILQKLYQESRGNGNGNRNENGCLVPSSLGNTSSTSFYALSKPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKTAVDAKIQAICQKVKRERAKKNASKKLCLSSDNANRAQSITSSSSPPSVFPDNDLFPTEDVLWKGDQSSTSSECPNMATDQNELFDGCSLARLPSFDPDLIWEVLAV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01887 306 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Pste1g01887 306 CDD AP2 121 181 IPR001471 GO:0003700|GO:0006355
Pste1g01887 306 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Pste1g01887 306 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Pste1g01887 306 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Pste1g01887 306 SUPERFAMILY DNA-binding domain 122 179 IPR016177 GO:0003677
Pste1g01887 306 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 31 304 - -
Pste1g01887 306 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Pste1g01887 306 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Pste1g01887 306 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01887 Pste-Chr1 5834635 5835555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01887 1 305 AP2-EREBP Transcription Factor Family AT1G64380 45.714 5.09e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste1g01887 AP2 6.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01887 1 5834635 5835555 Pste1g01887 1 5834635 5835555 ECH