Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01877 ATGCTTGAGTACCATTGTAACTCTTGTTCTGCTGATTGTTCTCGGAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGCACCGACTGCTTTAGCAATAGAAGATTTAGGTCTGGCATGTCTTCATTGGACTTTATACTCATGGAACCAGCCGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACAGATCAAGAGACCCTTCTACTCCTTGAAGCATTAGAACTTTATAAAGAAAACTGGAATGAAATTGCAGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGAGGATACCTTTGTTGACTGTGATGATGATGTTGATGCTGGTTGCAAAGAAACTGCAGATCCAGTTGCAACAAACATTGACTCATCTATGGACAAGGATGCTTCAGAATGTATTGAGAATGATACTAGTGATGGCATCAAAGACAATGATAAAACTTCCAAGGCTGAAGATGTTGAAGTGAAAGTGAATCAGGAGGAGACTCCAAAGATAAAAGAAGGCAGTGATGAGAAAGCTGGCGAGGGTACTTCTAAATCAGATGATGTGATAAATATTGCTCAGGAAGCAGGCAATGACTGTGCTATAAATGCTCTTAAGGATGCATTTGCTGCTGTAGGTTATTCTCCTGGATCTGAAGGCCCTTCTTCTTTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGTTTTCCTTGCACACTTGGTGGGTTCTGACATGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCTATGTCAAGAAATTCTCCTAGCACTGAGCTTGCTGCAAGATGTTGCTTTCTTCTAGAAGATCCGCCAGATAAAAAGGAATCAACTAGCTGTGAGAGGGATTCTAAAACTGAGGGAGATCAGGATGAAGTAGTTGTAAAGCAGAATAAAGCAATGTTGGAGGATAAAGATTTACCGAATGATCACTATGATACGAAAATTGAAAGTAATGCTTTAGAAGAAGACAAGGGACAGCCAGCTTCTACAGATGATGGAGCCTCAGAAAAACCTATTTCTTCAAAGGAGCAAGTGGTGATTAATCAGGAATGTAGGCTTGACAATTGTAATGATCCCAACAATGGAAAGCTACCTAATGATCAAGTACCATGCACTCTGCATAGTTCAAGTGCTTCAATATCCAAGGCTGAAATTCTACCTAGTTCTGACAAGGTTCGGGAGGAAACTTTGATTGAAGAACCTAGCCTTTCTGTAAAGGACCATCGTGTGTCTGATTCGCTACCATCAGAGACATCAAAAGAGGCCGAGATGGTTTCTGATTCTATTCCCTTGGCCAATAGCAAGACTCAAAATCCAGCAGTCGACAAATCCAGCCCGTGAATCTCTAGAAACAAATGACTCGGTAATGGATGTTGATGGAGTTCCTAATTCCTTGCTGTCGGAAAAGATTGACTCTCAGCCACCATCAAAATCATCCCAATGTAATGGGACAGAAAAGGATGTAGATATGATGTTACCTGCTAATTCAGTTAGATCAACTTCTGGTGCTGAAAATGGTGCAAATACAGGTAAAGATCATGCAGATAATGGAGTAAAAGTGGATGATGATGGTACAAAGACTAAACAGGATAGCAATTTTGAGAAAATAAAACGTGCTGCAGTTTCTACACTTGCTGCAGCTGCAGTAAAAGCAAAACTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTGATAGAAAAGCAGTTGCACAAGTTGGAAACAAAGTTGGCATTTTTCAATGATGTGGAGAATGTAGTAATGAGGGCAAGGGAGCATGTGGGCGGTCACGGCATAAGCTTTATCACGAGCGTGCTTTGATAATTGCATCACGGCTTGGTATACCAGCCTCCTCATCTAGAGGTGCACCGCCATCCATGCCGGCTAATAGAATTCAAATGAATATTGCAAACTCTCTCCCAAGACCGCAAATGGTGATGAATCCGCCAAGGCCACTGATTTCCAGACCTGCAGGCACTGTTGCTACTGCTCTTCAAAACCCATTAGCATCTTCAACTGCTGCAGGGAATTCAGTTCGGCCATCTAACTAGGAAAAGCTTTCTTCTGTTGGGGGCAAAAATAAAATTGAGAGTACATATGGAAAAAAAAAGTACTTGTCTTCGTACTTACTGATCTCTTGCCATCATTTTGACAATGTGAGTATGCATTCTCATTAGAATAGTGTAGTCAATGACTGGTATTTTAGACAACGTAAATAGAAAGATAATTAGCAAAAGACGAGCTAGGAAATTTTAAAGAAGTAAAAGAAACACATAAAGTTCAACACTTCAACTTGAAAATTTTAGCAAGTTCATGTATATGAAACTTGAAATATTACAACTTGAGAAAGCATTGACAGTCTGTTTCCCATGATTTTGTAGTTCGACCTTATTATTTTAACTGGTTTTGCATTTTCCTGTGTTGGGAATTTGTCACTGTTCCTCTTTTCTCTTTTACCTTGTTCTCAATTCCTTGTTCCTACAAACATATGTCATTCCATTTAATAGATTTGATCAAGTATGATATGTGAAAACTGAATTAGATAGATAGATAAACTAGCCCTGTACGACAAATTACTTTCTATGCGTTAAAACAGTATTAGTTCCGATCTTATTTTTTCCATTGTTGTATTATGCATGTTTTAATCTTAACTACACATGCTCTTGAGAGAGGGTTGACTCCTGTGCACGAGGGAATACTTTTTTATGTTTGATTTATGGTATGAAAGTCTATGCATGCATTCATGTGTTTTGAGTTCCCTAATGACTTGTGAGGTCCAGTAATGTGGATGCATAAGGTGGATTGTGAGACCCATTTTAGAGGGAGGATTAACTCCTTTGCTCAAGGGAATACCTTTTTTAATTGTTTTTATCAAGAAGCTAATCTATTTTATGGAGGATAATAAGCAGAATCTCATGGGTTACAATACAATGGATGCTGCTCCGATCATAATTTATTTACATATTGACAGAAATTTGTTTGGTTGCCCTTGTACAATGCCAAATACTTACCGGTCAGTATTGTGAGATAACTTCTCTGTTCCAAATTGCCTGATTACTTTTAATTTAGTTCATTTCTTTTACTGTATGATAACTGCAATGTATGGTGTTATAACAACAGTACGACGAGGATGACATTGAAAACGATTACCAAAAGTATATTGTAGTCCTAGTATAGAAACTTGTTTGGTTGATTATTATTACTATGAACACTTGTTTGCATTATTATTAACCCTTGGTAATTTGATCCAGTCAATTCTTTCAAAGGTCAAGTGCTGGTTAGGACTAACTCCAAATTGACTACTATTGGGAATTCAGTTACCAGAGTAGAGTGCATTGGAAACTCATCCTTTCCCAGTTATAAGGAGCAAACGCAGATGAGAGGACGGAAGTTTACTGATATATTTGAGGTTGTAGAGCCATATTTTTTAAAATTTATTTATGATGTGTTTAACTTAAAACAAGTGGATAGTTGTGCAAAATGTGCGCGTTCAATCCTCTAACTTCAGTGCTATTCACCACATTATTGGATGAGAGCATATTGAAATTTGGATGACTTCATAAAGAATATATAGCAGTCTGGCAAATCTAGAATTGGCT 3651 0.3835 MLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNRRFRSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCILHFVQMPIEDTFVDCDDDVDAGCKETADPVATNIDSSMDKDASECIENDTSDGIKDNDKTSKAEDVEVKVNQEETPKIKEGSDEKAGEGTSKSDDVINIAQEAGNDCAINALKDAFAAVGYSPGSEGPSSFAEVGNPVMALAVFLAHLVGSDMAVASAHSSIKSMSRNSPSTELAARCCFLLEDPPDKKESTSCERDSKTEGDQDEVVVKQNKAMLEDKDLPNDHYDTKIESNALEEDKGQPASTDDGASEKPISSKEQVVINQECRLDNCNDPNNGKLPNDQVPCTLHSSSASISKAEILPSSDKVREETLIEEPSLSVKDHRVSDSLPSETSKEAEMVSDSIPLANSKTQNPAVDKSSP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01877 459 MobiDBLite consensus disorder prediction 138 189 - -
Pste1g01877 459 MobiDBLite consensus disorder prediction 400 429 - -
Pste1g01877 459 SUPERFAMILY RING/U-box 3 49 - -
Pste1g01877 459 SUPERFAMILY Homeodomain-like 58 111 IPR009057 -
Pste1g01877 459 CDD ZZ_RSC8 4 48 IPR041984 -
Pste1g01877 459 CDD SANT 79 104 IPR001005 -
Pste1g01877 459 Gene3D - 58 109 - -
Pste1g01877 459 MobiDBLite consensus disorder prediction 285 343 - -
Pste1g01877 459 MobiDBLite consensus disorder prediction 132 192 - -
Pste1g01877 459 FunFam SWI/SNF complex subunit SMARCC2 isoform C 59 109 - -
Pste1g01877 459 SMART zz_5 3 44 IPR000433 GO:0008270
Pste1g01877 459 SMART sant 59 107 IPR001005 -
Pste1g01877 459 MobiDBLite consensus disorder prediction 395 459 - -
Pste1g01877 459 MobiDBLite consensus disorder prediction 430 459 - -
Pste1g01877 459 Pfam Zinc finger, ZZ type 3 38 IPR000433 GO:0008270
Pste1g01877 459 ProSiteProfiles SANT domain profile. 62 109 IPR017884 -
Pste1g01877 459 Pfam Myb-like DNA-binding domain 61 103 IPR001005 -
Pste1g01877 459 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Pste1g01877 459 MobiDBLite consensus disorder prediction 285 359 - -
Pste1g01877 459 ProSitePatterns Zinc finger ZZ-type signature. 6 32 IPR000433 GO:0008270
Pste1g01877 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 97 IPR017930 -
Pste1g01877 459 ProSiteProfiles Zinc finger ZZ-type profile. 1 55 IPR000433 GO:0008270
Pste1g01877 459 PANTHER SWI/SNF COMPLEX-RELATED 36 360 - -
Pste1g01877 459 Gene3D - 2 49 IPR043145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01877 Pste-Chr1 5788787 5793673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01877 4 101 EF-hand Containing Proteins AT3G07740 37.069 2.31e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste1g01877 Myb_DNA-binding 2.4e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01877 1 5788787 5793673 Pste1g01877 1 5788787 5793673 ECH