Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01866 GAAGATATGTTTGACTTTTTATAAATGTATTCTTAGCATTTGATGAATGGTAAATGAAAAGGGGAGGGAAGAGTGTTTGAGGGTTGAGATGGGGAAAAGTGGGCCCAGGTGTACGAAACTCGCATTCGCATATGCTGCGTAGCGTGAGAACTGAGAAACAAAGAAAGAAACATTCATTAACGTGTGTGTGTGTAATTCTTCTTCTTCTTCTTCTCCTCTGGAAGTTGATTTTCTCCATGACTTGTAAATTTCCATTATCCCAATGCTCTTCCTTAATTAATTAATAAATAAATCCGGAAATGTCTGTTACGGAGCTAAAAGAGCGTCACTCCGCTGCCACCGACACCGTCAACAGTCTGAGACAACGGTTAAAGCAGAAGCGCCTTTCCTTGCTCGACACAGACATTTGTGGATATGCAAGGTCTCAGGGTAGAACACCTGTGACCTTTGGTCTTACGGATCTGGTTTGCTGTAGAACCTTGCAGGGTCACACGGGAAAGGTGTATTCATTGGATTGGACTTCTGAAAAAAGTCAGATTGTTAGCGCATCCCAAGATGGGCGATTAATAGTGTGGAATGCTTTAACTAGACAGAAAATTTATGCCATAAAACTGCCTTGTGCATGGGTCATGACATGTGCTTTTTCACCAACTGGTCAATCTGTTGCATGTGGCGGTCTTGACAGTGTTTGTTCTATTTTCAATCTTAATTCACCCACTGTTAAGGATGGGAATCTACCTGTTTCCCGGATGCTTACTGGACATAAGGGTTATGTTTCCTCCTGTCAGTATGTTCCAGATGAAGATACTCATTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTTCTACTGGCCTTAAAACATCTGTCTTTGGGGAGAGTTTCAGTCTGGACATACTGCAGATCATCTCCATTAATGGATCCAACTCAAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCCCGATTGTGGGATACCCGTGTTGCAAGTCGAGCTGTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCAGTGAAATTCTTTCCAGATGGAAATAGATTTGGAACTGGTTCTGATGATGGAACCTGTAGATTATTTGACATTAGGACTGGACACCAACTTCAAGTATATTATCAGCAGCACAGTGACAATGAGATCCCACCTGTGACTTCCATTTCATTCTCTGCTTCAGGAAGACTTCTTTTTTCTGGATACACAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTGGTCTTGAATTTAGGATCTCTCCAAGACTCTCATGAGGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTATATGGGCATTTGGAGGGCATAGGAGGACAACTTAAGCCGTTGAGGGAAGGTCAAATTGTCGAGGAATTGCTTGGTTATATGAACCTTCATTTTAGCCTTGCAACTATTGTAGCGCGTAGCACGGCTATAGTACTATACTAA 1499 0.4209 MSVTELKERHSAATDTVNSLRQRLKQKRLSLLDTDICGYARSQGRTPVTFGLTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIYAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTVKDGNLPVSRMLTGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDISTGLKTSVFGESFSLDILQIISINGSNSRMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNEIPPVTSISFSASGRLLFSGYTNGDCYVWDTLLAKVVLNLGSLQDSHEDRISCLGLSADGSALYGHLEGIGGQLKPLREGQIVEELLGYMNLHFSLATIVARSTAIVLY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01866 399 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Pste1g01866 399 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Pste1g01866 399 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Pste1g01866 399 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 277 - -
Pste1g01866 399 FunFam Guanine nucleotide-binding protein subunit beta 2 357 - -
Pste1g01866 399 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 353 IPR016346 GO:0007165
Pste1g01866 399 Gene3D - 9 356 IPR015943 GO:0005515
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Pste1g01866 399 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Pste1g01866 399 Pfam WD domain, G-beta repeat 284 320 IPR001680 GO:0005515
Pste1g01866 399 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Pste1g01866 399 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 239 IPR001680 GO:0005515
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 320 IPR001680 GO:0005515
Pste1g01866 399 Coils Coil 3 23 - -
Pste1g01866 399 CDD WD40 57 354 - -
Pste1g01866 399 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Pste1g01866 399 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Pste1g01866 399 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Pste1g01866 399 PIRSF GNBP_B 1 355 - -
Pste1g01866 399 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Pste1g01866 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Pste1g01866 399 SMART WD40_4 234 273 IPR001680 GO:0005515
Pste1g01866 399 SMART WD40_4 188 230 IPR001680 GO:0005515
Pste1g01866 399 SMART WD40_4 145 185 IPR001680 GO:0005515
Pste1g01866 399 SMART WD40_4 276 320 IPR001680 GO:0005515
Pste1g01866 399 SMART WD40_4 96 135 IPR001680 GO:0005515
Pste1g01866 399 SMART WD40_4 54 93 IPR001680 GO:0005515
Pste1g01866 399 SUPERFAMILY WD40 repeat-like 54 353 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01866 Pste-Chr1 5760793 5764667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01866 154 301 Eukaryotic Initiation Factors Gene Family AT2G46290 25.871 1.75e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01866 1 5760793 5764667 Pste1g01866 1 5760793 5764667 ECH