Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01862 CTAGAAGAAATTAAACTGCATGAAGCTAGATCAGATGTTGTTAGTGGAGCAGTTCAAGGGTTTCAAGAGGTGGTCGATGCTGGTGAGAAGGAGCGAAGGTTGGTTGCAGTGTGGCAGGAAGCACGAAGGCGTAGTGTGGATGAAAATGTACAAGTGCTTAAAGTTCTAAACCTCTCCAAGAAAATTTACTATCTACTTTTAATGCGGAAATTTGAATTCAGTTCTGTGGCAGGCATGCCTAGTTCCATCGTATGCTTACTTGAACGACTAAGCGTAGGACAGGTGTTGACAAGTGACCATTCAGACACAGAAGGAGGGAGGGGACTAGCTGTCTCTGGCAGTGGCAGCAGAAGCAGAAAAGTTACAGAAATTCTGGTCAGGAAGGAACCAAAGCAACCTTTCTTGTCGCTGGTTATGGATGGAATGTACGGAGTGCCGGAGTACGCCGCCGACAAAGCCCTGGCTTCGGAGAATCTGATTTTCCCGCCGGACTATCACAACGGTTTCCTCGCCGCCACTCGGATTCCGATGTTCGGATCCGACGAGCTATTCTCCGCCGAGCCCTCCGCCGGAATTCAGCGGCAGCAGCAGGAGGAGGAGGATGAGGTGGCAGCCACCACCGTGATGAAGGCCAAAATCGCCTCTCACCCTCAGTACCCTCGCCTCCTCCAAGCTTACATCGACTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTTGACGAGTTCATGGAAACCTACTGCGACATGCTGGTGAAGTATAAATCCGACTTGGCTCGCCCTTGTGATGAAGCTACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACCGGTGCTTCCGTTTCCAACGTTTCTGATGATGGGGGGGTGTCTTCGGACGAAGATCTTAGTATTGGAGACGGCGATGCTCAAGAAGGGCAACTGAAGGGTGAAGATCGTGAGCTTAAGGATAGGCTTTTACGTAAGTTTGGGAGTCACATTGGCACTTTGAAACTGGAGTTTTCTAAGAAGAAAAAGAAGGGTAAGCTTCCCAAGGAAGCAAGACAAACATTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCGGATAAGATTGAACTGGCAAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCTATGATGGAAAATCTTAACGGACGGTTCCTTGCTGATGAATGAGGAGCATGTACATGATATTCTCAAATGTATATCCCAA 1384 0.4884 LEEIKLHEARSDVVSGAVQGFQEVVDAGEKERRLVAVWQEARRRSVDENVQVLKVLNLSKKIYYLLLMRKFEFSSVAGMPSSIVCLLERLSVGQVLTSDHSDTEGGRGLAVSGSGSRSRKVTEILVRKEPKQPFLSLVMDGMYGVPEYAADKALASENLIFPPDYHNGFLAATRIPMFGSDELFSAEPSAGIQRQQQEEEDEVAATTVMKAKIASHPQYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPCDEATTFLNKIEMQLSHLCTGASVSNVSDDGGVSSDEDLSIGDGDAQEGQLKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLADE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01862 448 Pfam ELK domain 345 366 IPR005539 GO:0003677
Pste1g01862 448 SMART ELK_2 345 366 IPR005539 GO:0003677
Pste1g01862 448 Pfam KNOX1 domain 209 250 IPR005540 GO:0003677|GO:0005634
Pste1g01862 448 SMART KNOX1_2 207 251 IPR005540 GO:0003677|GO:0005634
Pste1g01862 448 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 185 435 - -
Pste1g01862 448 Pfam KNOX2 domain 261 307 IPR005541 GO:0003677|GO:0005634
Pste1g01862 448 SMART HOX_1 367 432 IPR001356 GO:0003677
Pste1g01862 448 SMART KNOX2_2 257 308 IPR005541 GO:0003677|GO:0005634
Pste1g01862 448 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Pste1g01862 448 SUPERFAMILY Homeodomain-like 366 437 IPR009057 -
Pste1g01862 448 CDD homeodomain 377 429 IPR001356 GO:0003677
Pste1g01862 448 ProSitePatterns 'Homeobox' domain signature. 403 426 IPR017970 GO:0000981|GO:0006355
Pste1g01862 448 MobiDBLite consensus disorder prediction 318 342 - -
Pste1g01862 448 Gene3D - 364 438 - -
Pste1g01862 448 ProSiteProfiles ELK domain profile. 345 365 IPR005539 GO:0003677
Pste1g01862 448 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01862 Pste-Chr1 5742294 5759239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01862 139 448 Homeobox Transcription Factor Family AT1G23380 64.848 1.40e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste1g01862 KNOX2 5.5e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01862 1 5742294 5759239 Pste1g01862 1 5742294 5759239 ECH
Pste1g01862 1 5742294 5759239 Pste7g00424 7 4093153 4101620 PCT