Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01852 CGGAAGGAGGTGGAGGAGAGGATATGGATATGGATATGGTAACGGGTATTGGTATGGATGGCAAATGCAAATGGTTGCAGCGTTGTGGTTGGCTTCCTGAGCCGAAGCCGAAAGGAGCATTCTGCATTTGTTACCGGCACAAGGCGGAGGTCCTCCGTGGTCTGCAGTTGTCGTCCGAAATGGGAGAGAGGAAGCTGGCGAAGAGCGTCCACGGGAGGCTCCTGAGAGTGAAAGCGGAGGATGTCCATCTGTGGAACGCCGTCATCTCGACTTACCTGAAAGTGGAGCTCTTCTCCGACGCCCTCCGCGTCTTCCTCTCCCTGCCTTCCCCCAACGTCGTGTCTTGCCTCTCTCATCTCCTTTCTCTCACTCTCCCCGCCCCCGCCGCTCTCCTCCTCTTCCTCCGCATGATCCGCTCCCACGTCCCCCCTAACGCCTACACTTACGTCGCCGTTTTAACCGCCTCCACCAGATTCCCCCACTTCCACTTCGGCCTCCAGCTCCACGCCGCCGCCCTCAAAACCTCCCTTCTCCACTCTCCCTTCGTCGCCAACGCCCTCCTCTCTCTCTACTCCCACCTCTCCTCTTTCCACTCCGCCCTTCAACTCTTTCACCTCATTCCCCACCCCGACCTTGCCTCCTGGAACACCCTCCTCTCCGCCGCCCTCCACCACTCTTTCCCCCTCACCGCCTTTCGCCTATTCCCTCTCATCCCCTTCCAACCCGATCATTTCACTCTCTCCTTACTTCTCTCTTCCTGTTCCTCCCTCTTCCTCGGTCAACAACTTCACGCCCTCGCTTTTAAATTTTCCCTCCACACTCACTTGACCGTTTCCAATTCCCTCCTTTCCTTCTACACTAAATGCGGAACCCTTCACCATGTCCTCTCCTTGTTTCGCCGTATGCCTCTCACCGATGTTGTAACTTCCACCCAGATGATTACCGCCTACGTCCACTTTGGCTTCTTCGATTTAGCTCTCACTCTGTTTGATCAAATGCCTCACAAAAATACTGTCTCTTACAACGCTCTCTTGTCTGGCTTTTGTCTCAATCACAAAGGTCTAGAGGCCGTCCGGTTCTTTCTCAGAATGCTTGAGGACGGTTTGGAGTTCTCTGATTTTACTTTCACCAGTGCTGTAGATGCCTGTGGCTTGCTTGGTCGTTACCATGTCGCCAAGCAGGTTCACGGCTTTGTCCTCAAGTTTGGCTTTCGATCCAATCCTTGTATTCAAGCTGCTTTGCTTGACATGTACACTAAGTGTGGGAGGATGCTCGATGCTGAGAAGATGTTTTTCAGATGGGAGTTAGCGGATTTTCTATCTGTGGCTTGGACCGCCATGGTGTGTGGCTATGCCCGTAATGGGCAACCCCAAGAGGCCATTTCTCTTTTCCATGTCGCTTACAGGCACACTAACTCAAATTTGGTTGATGATTGTCGTAATTTGTTTGATGAAATGACAAGTGTTTATCAAATTGAGCCCACGTCCGAGCATTATGCTTCTTTCATCAGTGTTTTGGGTCACTGGGAGTCTAAGGGAAATGAGCACAATGTTAAACTGATCAAGAGTTACTGCCAAAATGTAGAGGAGGAACTCTCCAAAATTTGTGGTGACATTCTGACTATTATAGACCAGAACCTGATTCCTTCTTCTGGATCAGCAGAAGCTAGTGTTTTCTACTGTAAGATGAAAGTTGATTATTTTGGGTATCTTGCTGAGTTCCAGACTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTGAAAGGATATGAGGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATTCGTCTTGGACTGGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGGGCCTGCCATTTGGCCAAGCAAGCTTTTGATGAGGCAATTGCAGAGTTGGACACCCTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGCTGTTGAGAGACAACCTGACTCTTTGGATCTCTGATTTACCAGAAGATGGAGTACAGAAAACACACATCAATGGTTTAGAAATTGTGCTGTCTCCTGACCTGAAGAAGGATTGCACC 2099 0.4988 MDMDMVTGIGMDGKCKWLQRCGWLPEPKPKGAFCICYRHKAEVLRGLQLSSEMGERKLAKSVHGRLLRVKAEDVHLWNAVISTYLKVELFSDALRVFLSLPSPNVVSCLSHLLSLTLPAPAALLLFLRMIRSHVPPNAYTYVAVLTASTRFPHFHFGLQLHAAALKTSLLHSPFVANALLSLYSHLSSFHSALQLFHLIPHPDLASWNTLLSAALHHSFPLTAFRLFPLIPFQPDHFTLSLLLSSCSSLFLGQQLHALAFKFSLHTHLTVSNSLLSFYTKCGTLHHVLSLFRRMPLTDVVTSTQMITAYVHFGFFDLALTLFDQMPHKNTVSYNALLSGFCLNHKGLEAVRFFLRMLEDGLEFSDFTFTSAVDACGLLGRYHVAKQVHGFVLKFGFRSNPCIQAALLDMYTKCGRMLDAEKMFFRWELADFLSVAWTAMVCGYARNGQPQEAISLFHVAYRHTNSNLVDDCRNLFDEMTSVYQIEPTSEHYASFISVLGHWESKGNEHNVKLIKSYCQNVEEELSKICGDILTIIDQNLIPSSGSAEASVFYCKMKVDYFGYLAEFQTDQERKEAAEQSLKGYEAASATANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWISDLPEDGVQKTHINGLEIVLSPDLKKDCT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01852 692 Gene3D - 449 676 IPR036815 -
Pste1g01852 692 Gene3D Tetratricopeptide repeat domain 255 388 IPR011990 GO:0005515
Pste1g01852 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Pste1g01852 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 188 500 IPR046960 GO:0003723|GO:0009451
Pste1g01852 692 PRINTS 14-3-3 protein zeta signature 516 540 IPR000308 -
Pste1g01852 692 PRINTS 14-3-3 protein zeta signature 547 569 IPR000308 -
Pste1g01852 692 PRINTS 14-3-3 protein zeta signature 609 635 IPR000308 -
Pste1g01852 692 PRINTS 14-3-3 protein zeta signature 636 665 IPR000308 -
Pste1g01852 692 PRINTS 14-3-3 protein zeta signature 582 608 IPR000308 -
Pste1g01852 692 Pfam PPR repeat 77 98 IPR002885 -
Pste1g01852 692 Pfam PPR repeat 272 294 IPR002885 -
Pste1g01852 692 Pfam PPR repeat 405 425 IPR002885 -
Pste1g01852 692 Pfam PPR repeat 434 457 IPR002885 -
Pste1g01852 692 NCBIfam pentatricopeptide repeat 434 457 IPR002885 -
Pste1g01852 692 NCBIfam pentatricopeptide repeat 331 362 IPR002885 -
Pste1g01852 692 SUPERFAMILY 14-3-3 protein 495 671 IPR036815 -
Pste1g01852 692 SMART 1433_4 419 676 IPR023410 -
Pste1g01852 692 Coils Coil 623 643 - -
Pste1g01852 692 Pfam 14-3-3 protein 490 662 IPR023410 -
Pste1g01852 692 Gene3D Tetratricopeptide repeat domain 153 254 IPR011990 GO:0005515
Pste1g01852 692 Gene3D Tetratricopeptide repeat domain 36 152 IPR011990 GO:0005515
Pste1g01852 692 Pfam PPR repeat family 328 375 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01852 Pste-Chr1 5713392 5722144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01852 496 670 14-3-3 family AT1G26480 81.714 9.80e-97 297