Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01838 CGTTTCATTACTAATGGCTTCTGCAGATGTTGAGTACAGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACGAGGCCGCCCTCGGGAAAGCCTTTTCTCCCTACGGCGAAATTGTTGAATCGAAGGTTATCAACGATCGTGAGACTGGAAGGTCCAGAGGATTTGGATTTGTCACCTTCGCCTGTGAGCAGTCAATGAGAGACGCAATCGAAGGAATGAATGGCCAGAACCTCACTACCCGTGGCAGCCTCAGTGCTGGTGGTTACGGGAGTGGTGGTGGATACAGCCGTGCCAGAGGTTACGGTGGTCGGCGTGAAGGTGGATATAACCGCAATGGTGGGTCTTCCAATCCCAAATTTGTAGGGTTTGTAGTTCCAATGGCTTCCGCAGATGTTGAGTTCAGATGCTTTGTTGGTGGGCTTGCCTGGGCCACCGATGCTGATACCCTTGAGAAAGCCTTTGCTTGCTACGGCGAAGTCATTGAATCGAAGATCATCAACGATCGTGAGACTGGAAGATCCAGGGGTTTTGGATTTGTCACCTTTTCGTCGGAGCAGTCCATGAAGGATGCCATCCAAGGGATGAACGGCCAGAACCTTGATGGCCGTAACATCACTGTCAACGAAGCTCAATCCCGTGGTAGCCGTGGTGGTGGTGGTGGCGGCGGTGGCGGCGGATATAGCCGCGGTGGTGGAGGGTATGGTGGCGGTGGCTACGGTGGTGGTGGTCGTCGTGAAGGTGGATACAACCGCGGCGGGGAGGCTATGGTGGTGGTGGTGGTGGTGGTGGGTACGGTGGCGGTAGAGACCGCGGTTATGGTGATGGTGGGTCACGATACTCTCGCGGTTCTGATTCCGCCGATGGAAGCTGGAACTAGTGCT 883 0.5515 MASADVEYRCFVGGLAWATDEAALGKAFSPYGEIVESKVINDRETGRSRGFGFVTFACEQSMRDAIEGMNGQNLTTRGSLSAGGYGSGGGYSRARGYGGRREGGYNRNGGSSNPKFVGFVVPMASADVEFRCFVGGLAWATDADTLEKAFACYGEVIESKIINDRETGRSRGFGFVTFSSEQSMKDAIQGMNGQNLDGRNITVNEAQSRGSRGGGGGGGGGGYSRGGGGYGGGGYGGGGRREGGYNRGGEAMVVVVVVVGTVAVETAVMVMVGHDTLAVLIPPMEAGTSA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01838 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Pste1g01838 290 SUPERFAMILY RNA-binding domain, RBD 130 239 IPR035979 GO:0003676
Pste1g01838 290 SUPERFAMILY RNA-binding domain, RBD 8 104 IPR035979 GO:0003676
Pste1g01838 290 SMART rrm1_1 131 204 IPR000504 GO:0003723
Pste1g01838 290 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pste1g01838 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 78 IPR000504 GO:0003723
Pste1g01838 290 Gene3D - 112 225 IPR012677 -
Pste1g01838 290 CDD RRM2_NsCP33_like 131 206 - -
Pste1g01838 290 Gene3D - 2 111 IPR012677 -
Pste1g01838 290 PANTHER GEO13361P1-RELATED 125 247 - -
Pste1g01838 290 FunFam Glycine-rich RNA-binding protein GRP1A 124 252 - -
Pste1g01838 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 75 IPR000504 GO:0003723
Pste1g01838 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 201 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01838 Pste-Chr1 5655196 5662941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01838 10 212 Eukaryotic Initiation Factors Gene Family AT4G34110 31.034 2.67e-20 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01838 1 5655196 5662941 Pste1g01838 1 5655196 5662941 ECH