Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01836 CATAGCAGACATGGGAAGAGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCCAAACTCAAGGCTTATATTGAACACCATGGTACTGGAGGCAACTGGATAGCCCTGCCCCAGAAAATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTTAATTATCTCCGCCCAAACATCAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAGTCTCTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTGCCAGGGCGCACAGACAATGATATCAAGAACTATTGGAACACTAGACTGAAGAAGAAACTCCTTGGAAAACAAAGGAAAGAGCAACAAGCTCAGGTTCGCCGGGTCAGCAACAATCAGTTGAAGCAAGATATGAAAAGGGAAACCGGAAATTTGATAGTGGCTTCTGAAGTCATCAATCAAGTTCCTTATCGGTCTGCAGAGTTTCCTTCTGTGCCCATGACAGTGATCAATGCTTCCTTCCAGCACTATGGTCTGAATAATCAAGCATCTCTGAGGAGCATGGTGGTTAACAAACTAGAGGGAATTAGATTTTCCAACGATCACCAACAGCAGCAGCAACCATACACCAATGCATGTGAAGTACCCTCCCCACCACAGCAGGCTTTTCCAACCACAATGAACATGGTAAATCATGTAGCCCTGGTGAGCAATGAAAGCAGTTACCAGCCACCAAATATATTTCAAGGGTTTGAAAACTTCCCAAGCGATTTTTGTGAACTGACCTGCGTGAACCCTCAACAAATGGCGGGTTTTAATTATGGAATGGAATCCATGGACATGAGCAATGGTGGTAGCACGAACACGACTTCAACGGAAAGTACTAGTTGGGGTGACATGAGCTCTTTGGTGTACTCTCCTATGGTTTCTGACTATGATGGTTGCCGACAAGGAATTTCTCAAGATATTATTGCTTTCGAAGAGTGTAAGTACTTTGGAATGCAGATGCAATAACGGCTCTGAATACGAGGTGGTCTCCATGTAAATTTGTACCGCTAAAAATATTTGGTGTTGGCCAAACCCTAATTACTGAGTTCATTTCCCTCACGAAATTTGTTGGTCTTGTAGTTTCTTGTTTCATTATATTCAAACTGTGCGAACTTCTTCCATATTTTGATACATATTGAG 1207 0.4333 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQVRRVSNNQLKQDMKRETGNLIVASEVINQVPYRSAEFPSVPMTVINASFQHYGLNNQASLRSMVVNKLEGIRFSNDHQQQQQPYTNACEVPSPPQQAFPTTMNMVNHVALVSNESSYQPPNIFQGFENFPSDFCELTCVNPQQMAGFNYGMESMDMSNGGSTNTTSTESTSWGDMSSLVYSPMVSDYDGCRQGISQDIIAFEECKYFGMQMQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01836 340 CDD SANT 71 113 IPR001005 -
Pste1g01836 340 SMART sant 13 64 IPR001005 -
Pste1g01836 340 SMART sant 67 115 IPR001005 -
Pste1g01836 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste1g01836 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pste1g01836 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pste1g01836 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pste1g01836 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pste1g01836 340 PANTHER OS09G0431300 PROTEIN 1 299 - -
Pste1g01836 340 CDD SANT 16 62 IPR001005 -
Pste1g01836 340 Gene3D - 70 145 - -
Pste1g01836 340 Gene3D - 7 68 - -
Pste1g01836 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste1g01836 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pste1g01836 340 FunFam Transcription factor RAX3 7 68 - -
Pste1g01836 340 FunFam Transcription factor RAX3 70 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01836 Pste-Chr1 5648997 5650500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01836 1 309 MYB Transcription Factor Family AT3G49690 52.050 4.85e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g01836 Myb_DNA-binding 9.6e-14 CL0123