Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01812 ATGAAAAGGGTGGCGTTTGGAAGGGTTGGACAGGCTCACGTGGCGGTCATTTCGGGGAATCTAGCAGCCACCTGTTCGGACATGACAGTGTTGGAACGACCCATCAAGTGCCAACCCTACTTCACCCAGTTTAACGTTAACGCCGTCTTCTCCTCTTCTCACTATCAGCCACCCAAGGAAAACACGGCTAAGAAGAGGAAGGCTCACAACTCCAAGATTGTTGCCGTTACGGATAATAACCTTAACATTAACAAGGACAAGAGAATCAAAGTAAGTGGTGATGAAGTGGATTCCAACAAAGTAACACACCTAACCAGCAACAAGCTTACTGCCAAATCCAATAGAGAAACCTCTGCCGACACTTCCGATGTTCAAAATCACAATCCTCAGTTCATTCATGTCCGAGCACGTCGTGGTCAAGCCACCGATAGTCATAGCTTAGCTGAAAGAGTCAGACGGGAGAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTGCCAGGTTGCAACAAAATTGCTGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTGCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCCATGAAATTAGCGGCTGTAAACCCAAGACTTGACTTCAATATTGACCAACTCTTTGCCAAAGAGGTGTTTCCTTCTTGTGCTCAAACTCAAAGTTTTCCATACACAGGGACGCCGTCAGATATAAGTATGAGTAACAACTCCTCGTATCTTCAGTTCAATTCAGCGCATCAACTTGTATCGTGCTGTGGTGGATTAATAAATAACATGGGGATAAGCCCTCCGAATATGGGACTTCGAAGGAACATTAGTGCTACCCCTGTACCTTTTCCTGAAACTTTTCTTGAGTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGATTTCCAAAGCCTTTACAATGTTGCTTTTGATGAAGCCCGAACAGCATCCTTTCCTTCTCCGCCATTTGCAGGTTTACTTGAAGCTAGCAATCTAAAGATGGAGATGTAAACAAGATCATCCATTATAATTTGTTGGATTAGCTCACTCCGAATGCCTTTGTCGAGATTTTTTTTTTCCCTTTTCATGTGCATAACTTATATTGGTTGGATACTGCTAAGTAGAATAAATAAGATCATTTTTTTAGGTGAAT 1177 0.4257 MKRVAFGRVGQAHVAVISGNLAATCSDMTVLERPIKCQPYFTQFNVNAVFSSSHYQPPKENTAKKRKAHNSKIVAVTDNNLNINKDKRIKVSGDEVDSNKVTHLTSNKLTAKSNRETSADTSDVQNHNPQFIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDQLFAKEVFPSCAQTQSFPYTGTPSDISMSNNSSYLQFNSAHQLVSCCGGLINNMGISPPNMGLRRNISATPVPFPETFLESSCFTQILPSSNWEGDFQSLYNVAFDEARTASFPSPPFAGLLEASNLKMEM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01812 344 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 247 IPR024097 GO:0006355
Pste1g01812 344 FunFam Basic helix-loop-helix transcription factor 137 209 - -
Pste1g01812 344 CDD bHLH_AtBPE_like 131 215 - -
Pste1g01812 344 Gene3D - 137 211 IPR036638 GO:0046983
Pste1g01812 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 190 IPR011598 GO:0046983
Pste1g01812 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 209 IPR036638 GO:0046983
Pste1g01812 344 SMART finulus 146 196 IPR011598 GO:0046983
Pste1g01812 344 MobiDBLite consensus disorder prediction 105 128 - -
Pste1g01812 344 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01812 Pste-Chr1 5560125 5562713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01812 131 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 53.261 2.60e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g01812 HLH 2.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01812 1 5560125 5562713 Pste1g01812 1 5560125 5562713 ECH
Pste1g01812 1 5560125 5562713 Pste1g02683 1 10587822 10588885 ECH