Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01809 AACAACTACAAATAACAACAACCCATATCTCAAAATTCGATTTTGTCCATCGCAGACCCGTTAATTTTGTTTGCTTGGGAAACAGAAATTAAAGGGTCTCTTCCTTGTGCCTTTTTCTTTGTGGGTCTGATCTTTGTACTTATGGAACTGTCACATCTGAACGCTTTGATTCTCTTCTGAGCATCACCTGGTTAAAAAAGCAAGAAGCTTCGTGATCTGTTTTTCTGAACTTGATCTGAATTTGTCCCTTACCTTACCTTACTTTACCTCTCTCTCTATACTTTCAACCGTTTGTGTGTGTTCACATGATCATGGAATGTGCATATACCATATAGTCCTTGCGGATTTTGAGATTCGTTGTTCATTGCTCATGATGTCGTATCAATCAATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGGAAGTCTCTTGGTGGCCACATCAGGACTCACATGGGTGAGCATTCAGCTTTAGGAAATGAAGAGAGGAGCAATGCTGCTAATGCTATGTTCAAGTTTGATGGAGGGAGAAAGAGGAAGAGGGATTTGGGCTTTGAAGGTGGCGGTGGCGGTGGCGGTTATGGTGATGGTGGGAACAATAACATCATTTATGGTCTTAGAGAGAACCCCAAGAAGACCACGAGGTTTGTGCACTCCAATGCCACTTTGCAGCTTGACAAGTTCTGCAAGGAATGTGGGAAGGGTTTTCCATCATTGAAGGCTCTTTGCGGTCACATGGCTTGTCACTCCGAAAAGGACAAGGGTGCCAACAGGTTTGAGAACAGTTCTGGTGGCTTTGCTGAGAAGCAGAAATTGGTTATGGACAGTCAATCTGATACTGAGACTTCAACTCCAAGGAGGTCCAAGAGAATGAAGTTCAAGACCCTTAGCAACAGCAACAACCAACCTCAATCTTCTTCTGTGTCAGAGGTTGAGCAGGAGCAAGAAGAGGTGGCCATGTGTTTGATGATGCTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTGCTTTGCTCACTGAGTCTTCTGACAACAACTCGGTTGTTCTCGAGGCTAAGTCACCTTCTCTTGAAACCAAGATTACTATGATGAACACTAATGGTAAGAATTCTATGTCTAGTGCTTATGTGGAGAAGAAGCTGGAGCAGCATAGGGACATGAAGTTTAAGTCTGCTGAGATTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGTCGGATGATTCAAATGATGGGTTTTTCAGGACTTCCAAAATGGGGTACTTGCCTGGGTTTGAGGATTATGATGTTGAATCGAGGAACTTGCTGAGCAGAGGAAGAAACAGGAGCACTGAATTTAAGAAATTTGGTTTGGAGGATTGGGAGAATGATAGAGATGATGGTGGGGCTGCAAGGAAATTTGGTTCAAAGAAATTTAAGAAATCCAACTATGGTTCTCTTGGTCAAAATTTAGGTGGGGCTTCTAGTAGAAAGATGGGAAATGGTTTTACCAATGATGGGATCAATAAGTATGAGTGCTTGACTAGTGAAAGGGACAATGGTTCTGATGATTCAGCGTATGAGACTGATGACAACAGCACAGACACTGATTCTTATCCTGCTCCAAAGGCTCACAGCAGCAGGAACCTCAGTGGCCAGAAGGGGAAGAAGAAACTGAAGTCAAAGAAAAGCAAGTCACACGAGTGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAAAGATCCCACTTTGTTGGAGGTTCTGAGGAGAACACCCTGGTCATAAGGCCAGGTGCTCCTTCTGTTCCTTGCCTCATTGATCTCAATCTACCAGCTCCTGTTGATGAATAA 1882 0.4352 MCIYHIVLADFEIRCSLLMMSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMGEHSALGNEERSNAANAMFKFDGGRKRKRDLGFEGGGGGGGYGDGGNNNIIYGLRENPKKTTRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKDKGANRFENSSGGFAEKQKLVMDSQSDTETSTPRRSKRMKFKTLSNSNNQPQSSSVSEVEQEQEEVAMCLMMLSKDSSYKGRFALLTESSDNNSVVLEAKSPSLETKITMMNTNGKNSMSSAYVEKKLEQHRDMKFKSAEIGYDSDNSDSGYFRYGPKSDDSNDGFFRTSKMGYLPGFEDYDVESRNLLSRGRNRSTEFKKFGLEDWENDRDDGGAARKFGSKKFKKSNYGSLGQNLGGASSRKMGNGFTNDGINKYECLTSERDNGSDDSAYETDDNSTDTDSYPAPKAHSSRNLSGQKGKKKLKSKKSKSHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPGAPSVPCLIDLNLPAPVDE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01809 521 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Pste1g01809 521 MobiDBLite consensus disorder prediction 413 465 - -
Pste1g01809 521 Pfam C2H2-type zinc finger 30 54 - -
Pste1g01809 521 Pfam C2H2-type zinc finger 466 488 - -
Pste1g01809 521 Pfam C2H2-type zinc finger 130 152 - -
Pste1g01809 521 SUPERFAMILY beta-beta-alpha zinc fingers 129 488 IPR036236 -
Pste1g01809 521 SUPERFAMILY beta-beta-alpha zinc fingers 26 56 IPR036236 -
Pste1g01809 521 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Pste1g01809 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Pste1g01809 521 ProSitePatterns Zinc finger C2H2 type domain signature. 468 488 IPR013087 -
Pste1g01809 521 SMART c2h2final6 466 488 IPR013087 -
Pste1g01809 521 SMART c2h2final6 30 52 IPR013087 -
Pste1g01809 521 SMART c2h2final6 128 150 IPR013087 -
Pste1g01809 521 Gene3D Classic Zinc Finger 10 81 - -
Pste1g01809 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 466 488 IPR013087 -
Pste1g01809 521 MobiDBLite consensus disorder prediction 449 463 - -
Pste1g01809 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Pste1g01809 521 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 25 521 - -
Pste1g01809 521 MobiDBLite consensus disorder prediction 160 214 - -
Pste1g01809 521 MobiDBLite consensus disorder prediction 195 214 - -
Pste1g01809 521 MobiDBLite consensus disorder prediction 431 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01809 Pste-Chr1 5539962 5541918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01809 23 521 C2H2 Transcription Factor Family AT1G26610 41.121 8.87e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g01809 zf-C2H2_6 5.7e-07 CL0361