Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01807 ATTCCTCCCTTTGATTAACAATAATGATAGCCACCCACCCAACGCCCCCACAAAGGGTCCTATTCATTCCCTCTATCTCTCTTCTTCTTCTTCTTAAGAGCTAAGACCCTTTCAATCCTATCAGCCTTTAAACCACACACCATCTATATTTTTTCCAACTACGTACATCTCTCTATTCTCTCAAATGGGTCTTGATCAGGAACCAAATAGCTGTGGCCTTCACCTCGTTCTAGGGCTTTCTCTCACTGCAGCTACCGCAAAGGAAACCACCAACCCGGATCATCTTTGCGTTATTAAGCCAACGCCAACCAAACCTTATCCCTCCAATGAACCATCTTTAACGTTGGCTCTCTCTGGTGAGAGTTACCAAGTCACCAAGCAAGTGCCCAGAAATAACGTTCACAAGGTTTATTGTGAGGACCCTCTTGACTTGTCTAGACAGACATCACCTCACAGTGTCGTTTCGTCTTTCTCAACTGGGAGGGTTGTCAAGAGGGAAAGGGATCTTAGCTGTGAAGATGTAGAGATAGAGGCAGAAGAGAGGGTTTCTTCAAGAGCGAGTGACGAAGACGAAGATGGAATCAATGCTAGAAAGAAGCTCAGGCTTACCAAGGAACAATCAGCACTGCTAGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAATTAAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACGTTAACGGATGAGAACAGGAGGCTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTATCCCAACCCTTGTACATGCCTATGCCTGCGGCCACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGCGTTACGGATAACGCTTCCAATAAAATCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTACAACCCCTTCGCAAATCCTTCAGCAGCATGTTGATTATTATGGTTAGATTTTCACTCTTCAGGGGCCAAATTAAAACACATGAGCCACAACCATTGTATTTTTTTGGTTGAGAGCGATGCGTCTAGCTAGGCAAAATTAAGTTGTAATTAGCTAATACTGTTGAGAATAGTAACTGCTTATTGAAATTACTTTTTGTTTTTCTTCCTCTATTCTATGTTTATATAAACCATTATAGAAACCGTCCATCAATCTATGAAGGAATTAGATTTTTTTTTTTGTTCTTTTATAACTTTCTCATGGCCAAGCTTATGTATATAGATACATATATGTTAATGTCGTGAAACATCTATTATTCCC 1354 0.4276 MGLDQEPNSCGLHLVLGLSLTAATAKETTNPDHLCVIKPTPTKPYPSNEPSLTLALSGESYQVTKQVPRNNVHKVYCEDPLDLSRQTSPHSVVSSFSTGRVVKRERDLSCEDVEIEAEERVSSRASDEDEDGINARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLSQPLYMPMPAATLTMCPSCERLGGVTDNASNKIPFSMAPKPHFYNPFANPSAAC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01807 281 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Pste1g01807 281 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Pste1g01807 281 Coils Coil 198 228 - -
Pste1g01807 281 CDD homeodomain 136 193 IPR001356 GO:0003677
Pste1g01807 281 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Pste1g01807 281 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Pste1g01807 281 SUPERFAMILY Homeodomain-like 134 200 IPR009057 -
Pste1g01807 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 259 - -
Pste1g01807 281 SMART HOX_1 134 196 IPR001356 GO:0003677
Pste1g01807 281 Gene3D - 140 190 - -
Pste1g01807 281 FunFam Homeobox-leucine zipper protein 18 118 197 - -
Pste1g01807 281 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01807 Pste-Chr1 5538544 5540294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01807 1 281 Homeobox Transcription Factor Family AT4G37790 61.258 6.67e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g01807 Homeodomain 1.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01807 1 5538544 5540294 Pste7g00824 7 7670914 7672705 PCT