Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01748 ATGAGTTGGAGTTCAGCGTTGCATGGAAGAGACAAGAACAAGTTGAAGGGAGTACGACGTCGTAAATGGGGCAAATGGGTGTCGGAGATTCGCGTTCCGGGCACCCAAGAGCGTCTCTGGCTGGGAACCTACGCCACGGCGGAGGCTGCTGCGGTGGCGCACGACGTCGCTGTTTACTGTCTGAGGAGGCCCTCTTCCTTGGACAAACTTAACTTCCCCGACACCTTGTCGTCCTATTCTCTCCGCCTCACCGACATGTCTCCTAGGGCTGTTCAGAAGCTGGCTTCCGATGTTGCCATGGATGTTGATGCCAGAAACATTTTTGCACTTCAACCGTCACCTGTTGTTGCACAAACCTACGACAACCAAATTGATAATGTCTTTTGGTGGGACGCTAATGTTAACACTGATTCTGCTTCTTGCCAACCAACTGCTGCGGATTCTACACAAGCCTACCCATTCACCGTTTCCGTTGAAGATTATCTTTAG 489 0.5133 MSWSSALHGRDKNKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATAEAAAVAHDVAVYCLRRPSSLDKLNFPDTLSSYSLRLTDMSPRAVQKLASDVAMDVDARNIFALQPSPVVAQTYDNQIDNVFWWDANVNTDSASCQPTAADSTQAYPFTVSVEDYL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01748 162 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Pste1g01748 162 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Pste1g01748 162 SMART rav1_2 14 79 IPR001471 GO:0003700|GO:0006355
Pste1g01748 162 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Pste1g01748 162 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Pste1g01748 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 125 - -
Pste1g01748 162 SUPERFAMILY DNA-binding domain 14 74 IPR016177 GO:0003677
Pste1g01748 162 CDD AP2 14 75 IPR001471 GO:0003700|GO:0006355
Pste1g01748 162 ProSiteProfiles AP2/ERF domain profile. 14 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01748 Pste-Chr1 5369984 5370472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01748 11 104 AP2-EREBP Transcription Factor Family AT1G71520 65.625 5.68e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste1g01748 AP2 6.5e-11 CL0081