Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01733 ATGCTTAGAGCTCTCTTAAATATGAAGGATACAAGAGACTTTTCTGAATTCGTGTCAGACTTGATACTTCTGGTCGATGAAGTTGCTTCGTCTGCTAACAATCCTGAAATTGAGATAGAGGATGTTTTTACAGAGTTTGCCATGTTGATTCAGAAATTTGCACCAATCTTCAATGATTTGAGAGACAACGGCACAATAATGGACAAGCCAGCTATTAGAAAGTCTTTGGAATCTCTTATGAATGAGCTTACCCGAGCTAAAGCTTTGATCAGAAGCTCCTCCTTCAAATACCCCATCAAGCGAATTGAGGACGTAGCACATGATCTCGGTCGATCATTAGGTATGTTGCTTGTGGCAAGCCTTCAAGTGTCCACACATTTTAGAGAAAAGATTGGTACTTTGCAAAAACAGTTGATGAATGTCAAACTCGGTGCGAACGCGAGCCTAACTTCAAGTTCAATATCTACATTTGGCGATGAAGTCAAGGTGGGAGGCGAAATAGAAGAGGAAATAATTAATGTTACTAGTGACGATGTTTTGTTACAACTTAAGAATGGTGATAATGAACAATTTGCACTTGCACTCTTAAGATTAAAGAAGTTCGCTAGTGGTGGAAAACTGGACAGTGGTTTAATTTATGTGGAAGCTGTTGTTTTCACTCTTTTTAATCGTCTACATTCATGTAAGGCAGGCAATAGACTGACCATTATTCAGTGTCTACGAAGTATTGCTTTGGGAAATGAATCTACTAAGGAGAAGATGACAAATACTGAGTTATTATCAGCAGTGGTGAAGTCTCTAACAAGAGACACTGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGAACTCTCTGTCCTTCCTGCAGTTAGACGGAAGATTGGAAGAATTCAGGGGTGTATTGTTATGTTAGTTTCTATCCTGAATGGGGTTGATCCTGTTGCTTCACATGATGCAGCAGAGTTGTTGGGTATACTATCAAATAATACTCAAAATGCACTTCTTATGGCTGAGGCTGGTTACTTTGGGCCACTGGTGCAGTATTTGGATAAAGGTTGTGATATGAACAAGATCCTCATGGCAACAGCACTTTCTAGACTGGTGCTCACTGATCATAGCAAACTTACCCTTGGACAAAATGGGGTAATTGAGCCCCTTGTGAAATTGTTCAATTCTGGGAAACTCGAGTCCAAGTTGTCAGCTCTAAATGCACTGCAAAATCTTTCCAGCTTGACAGAAAATGTGCAGCGTTTAATCAAAACTGGAATTGTATCATCTCTGCTGCAACTTCTTTTCTCTGTAACATCCGTGCTCATGACTCTACGGGAGCCTGCATCAGCTATTCTTGCAAGAATCGCGGAGTCAGAAACTGTTCTTGTTAATCAAGGTGTGGCTCAGCAGATGCTCTCACTTCTGAATCTTTCTAGCCCAGTGATTCAAGCCCATTTATTAGAAGCTCTAAATAGTATTTCTGCTCATCCTTGTGCTTCAAAGGTGAGAAGAAAAATGAAGGAAAAAGGTGCAATTCAGCTAATTTTACCCCTTCTGAAGGAAACAAAAATTAAAATACGGAGCAAGGCGTTGAATTTGCTGTATACTCTCTCCAAAGATATAACAGATGAGTTGATTGCACATTTTGATGAAACTCATCTTTTTGACGTTGTTGTCATTGTCTTATCATCAACATTAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTATTAGTGATACAAAAGTGACAGATGTACTGAAGAGAGCAAATTTGCTGCCTGTTTTGGTATCCATTATGAATTCAAGCACAGGAAGTAACTCACCCACAAAAAGTATCTTAATGGAGAGTATTGCTGGCATTGCAATCCGGTTCACAAGTCCCGCTGACAAGAAACTGCAACTCCATTCAGCACAACATGGGGTTATTCCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCTGCAAACACAAAATTCAGAGCCGCAACCGCTCTTGCTCAACTGTCTCAAAATTCTCTCTCTCTTAGAAGGCCTAGGAAGTCAAGGTGGTTGTGTGTTGCTCCCTCAGTGGATGCATATTGTGAAGTTCATGATGGTTACTGCTTTGTGAGCAGCACATTTTGTCTGATCAAGGCAGGTGCTGTTTCTCCCCTTATCCAAATACTGGAAGATAATGATGGGGAAGCCGTAGAAGCTTCTTTGAATGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAAGGTGGTGCTAAATACATAGCCAAATTATCAGGTGTACAGGCTATTGTAAACATATTGGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGAATTGAAGAACACAGAATGAAATATGGAGAATTCTCTCAGGTGGTTCTTATTGATCTGGCACAGAGGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCCGTGCTGGAGCTCCTACTAGTTCAATCAAGTTATTTCTGA 2508 0.4051 MLRALLNMKDTRDFSEFVSDLILLVDEVASSANNPEIEIEDVFTEFAMLIQKFAPIFNDLRDNGTIMDKPAIRKSLESLMNELTRAKALIRSSSFKYPIKRIEDVAHDLGRSLGMLLVASLQVSTHFREKIGTLQKQLMNVKLGANASLTSSSISTFGDEVKVGGEIEEEIINVTSDDVLLQLKNGDNEQFALALLRLKKFASGGKLDSGLIYVEAVVFTLFNRLHSCKAGNRLTIIQCLRSIALGNESTKEKMTNTELLSAVVKSLTRDTEERREAVGLLLELSVLPAVRRKIGRIQGCIVMLVSILNGVDPVASHDAAELLGILSNNTQNALLMAEAGYFGPLVQYLDKGCDMNKILMATALSRLVLTDHSKLTLGQNGVIEPLVKLFNSGKLESKLSALNALQNLSSLTENVQRLIKTGIVSSLLQLLFSVTSVLMTLREPASAILARIAESETVLVNQGVAQQMLSLLNLSSPVIQAHLLEALNSISAHPCASKVRRKMKEKGAIQLILPLLKETKIKIRSKALNLLYTLSKDITDELIAHFDETHLFDVVVIVLSSTLDSEKAAAVGILSNLPISDTKVTDVLKRANLLPVLVSIMNSSTGSNSPTKSILMESIAGIAIRFTSPADKKLQLHSAQHGVIPLLVKLLSSGSANTKFRAATALAQLSQNSLSLRRPRKSRWLCVAPSVDAYCEVHDGYCFVSSTFCLIKAGAVSPLIQILEDNDGEAVEASLNALSTLLQDEIWEGGAKYIAKLSGVQAIVNILEAGDVKVQEKALWMLERIFRIEEHRMKYGEFSQVVLIDLAQRSDSRLKSTVAKVLAVLELLLVQSSYF 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01733 835 SMART arm_5 329 369 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 411 454 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 703 743 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 247 286 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 631 671 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 747 787 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 370 410 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 496 536 IPR000225 GO:0005515
Pste1g01733 835 SMART arm_5 288 328 IPR000225 GO:0005515
Pste1g01733 835 SUPERFAMILY ARM repeat 177 434 IPR016024 -
Pste1g01733 835 SUPERFAMILY ARM repeat 344 790 IPR016024 -
Pste1g01733 835 Gene3D - 700 826 IPR011989 -
Pste1g01733 835 Gene3D - 214 360 IPR011989 -
Pste1g01733 835 Gene3D - 361 681 IPR011989 -
Pste1g01733 835 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 175 835 - -
Pste1g01733 835 Pfam Armadillo/beta-catenin-like repeat 371 410 IPR000225 GO:0005515
Pste1g01733 835 Pfam Armadillo/beta-catenin-like repeat 639 670 IPR000225 GO:0005515
Pste1g01733 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 381 423 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01733 Pste-Chr1 5321926 5325407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01733 217 835 U-box Gene Family AT1G20780 28.746 3.77e-42 163