Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01729 ATGGACATGGCGTCTTCAAGTTCGAGGAATGTGGTTGGTGCTGCTTCTTCAGCGTACAGAGGAGTCCGGAAGAGGAAATGGGGGAAGTGGGTGTCGGAAATCCGCGAGCCCGGAACGAAGACGCGGATTTGGCTGGGGAGTTTCGAGACGCCGGAGATGGCGGCGGCGGCGTACGACGTGGCGGCGTTGCATTTCAGGGGCCGCGACGCGAGGCTGAACTTCCCCGAGCTGGCGAGCACGCTGCCGCGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCTGCTCTCAGGCTCCGCACCAACCCCGCCGCCCCGGACACCGGTGGCTCCGCCGCGTCCTCGGCCGCCGGCGCTCCCCTCACCGTCAGACTCTCCCCCACCCAGATTCAGGCCATCAACGATTCACCCATGGACTCCCCTCAGACTTGGATGCAAATGCCTGATGCCTTCATGATGCATGATCAGTCCATCATGTTCGCCAATGCCAATGGCTTTTCCTATTCCTTTCAGGATGAGGACAACCACTGGGACGATCTGCACAATGATTCTCTTTGGGATCCTTAG 579 0.6114 MDMASSSSRNVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAAPDTGGSAASSAAGAPLTVRLSPTQIQAINDSPMDSPQTWMQMPDAFMMHDQSIMFANANGFSYSFQDEDNHWDDLHNDSLWDP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01729 192 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Pste1g01729 192 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Pste1g01729 192 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Pste1g01729 192 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Pste1g01729 192 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Pste1g01729 192 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Pste1g01729 192 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Pste1g01729 192 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pste1g01729 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 163 - -
Pste1g01729 192 FunFam Ethylene-responsive transcription factor 2 17 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01729 Pste-Chr1 5308109 5308687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01729 17 192 AP2-EREBP Transcription Factor Family AT1G71450 59.091 7.67e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste1g01729 AP2 4e-13 CL0081