LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01711	ATGGATGAAGAAAGAAGAAGAAGCAGCAAGATGATGCAAGAGCAAGAGTGTCCAACAAGAAGTGGAACATCATCGTATCGTGGTGTTCGGCAACGAAAATGGGGGAAATGGGTGTCTGAAATTCGCGAGCCAGGTAAAAAGAGCAGAATATGGTTAGGGAGTTATGAGTCGGCTGAGATGGCAGCAGCGGCATATGACGTGGCAGCGTTGCAGCTAAGAGGACGCGCGGCCAGGCTCAATTTTCCTGAGCTGGCGCTGCCACGTCCCGCGAGCTCGAAACCCGAGGATGTCCAGCTGGCAGCACAACAAGCGGCATTGATGTTCAGAAAAACTACTACAACAACAGCAGCAACAACATCATCGTATACTAAAACGCCGTCTACTAATCAAGGATGTGGCATTAACGAGAATACTAGTGTGGTTCCTGTCAGGGTTGGACTCTCACCCACGCAAATTCAGGCCATCAATGAGTCCCCTTTGGACTCACCAAAAATGTGGATGGTGCAAATGGCAGAGGCTCTCAGGTCTGGCTTTCATGATCACTCCATGTTCATGCTCTCTGCTTGTGACCATCATTATGATGACTCTGCTTTCGAGTTCAGTCAATGGGAAGAAATACAGCATCAATCCTTATGGGACTCTCCTTAA	648	0.4861	MDEERRRSSKMMQEQECPTRSGTSSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESAEMAAAAYDVAALQLRGRAARLNFPELALPRPASSKPEDVQLAAQQAALMFRKTTTTTAATTSSYTKTPSTNQGCGINENTSVVPVRVGLSPTQIQAINESPLDSPKMWMVQMAEALRSGFHDHSMFMLSACDHHYDDSAFEFSQWEEIQHQSLWDSP	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01711	215	SUPERFAMILY	DNA-binding domain	24	83	IPR016177	GO:0003677
	Pste1g01711	215	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	12	167	-	-
	Pste1g01711	215	SMART	rav1_2	25	88	IPR001471	GO:0003700\|GO:0006355
	Pste1g01711	215	FunFam	Ethylene-responsive transcription factor 2	24	83	-	-
	Pste1g01711	215	CDD	AP2	24	84	IPR001471	GO:0003700\|GO:0006355
	Pste1g01711	215	MobiDBLite	consensus disorder prediction	14	28	-	-
	Pste1g01711	215	PRINTS	Ethylene responsive element binding protein signature	64	84	IPR001471	GO:0003700\|GO:0006355
	Pste1g01711	215	PRINTS	Ethylene responsive element binding protein signature	26	37	IPR001471	GO:0003700\|GO:0006355
	Pste1g01711	215	Pfam	AP2 domain	25	74	IPR001471	GO:0003700\|GO:0006355
	Pste1g01711	215	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pste1g01711	215	Gene3D	AP2/ERF domain	25	83	IPR036955	GO:0003700\|GO:0006355
	Pste1g01711	215	ProSiteProfiles	AP2/ERF domain profile.	25	82	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01711	Pste-Chr1	5260357	5261004	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01711	25	214	AP2-EREBP Transcription Factor Family	AT1G33760	52.850	9.23e-48	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Pste1g01711		AP2	2.7e-14	CL0081