Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g01703 | GCAGCTATTCATCCCTACTCGCTACTGGGCTGCGCAAACGCACATACTTTCTTCTCCTTCTGATTTTGTGGGAGAGCGCTAAAGCCATGGCTTCCGATTTGACGCCCCCGAATTTCAACAACGGTCCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGCCAACACCTTCTCATCGCCGGCCACTAGACGCCGCCGCCGCTCTTCCACTCCTTCCGCATTCGCCACCCCGTCCGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCCACTGCCCCCCGTTCCCGCCAGAGAAGCGGCGGCGGGCGCGTTCCCGCCACTCCAACCTCCACCACCGACGACATGCCGGTCTCTTCGGACGGCGGCGATGGCTACGACATGGACGACGCTAGGCCCACCTTCGTTTGGGGCACCAACATAAGCGTGGAAGACGTGAATGATGCGATTCAGAGGTTTTTGAGGGACTTTAGAGAAGCTTCGTCGAAAGATGATGATGGGTTGCCCTTGCACACCGAAGGTAAGTATGAGAAACTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTCGATGTTGATGCCTGCGACGTGTTTGATCATGACCCGGATCTCTACACCAAGATGGTCAGGTATCCTCTCGAGGTGCTCGCCATTTTTGACATAGTTTTGATGAATATGGTTAGCCGATTAAAGCCTATGTTCGAGAAGCACATTCAGACTAGGATATTCAACCTCAGAACCTCAACTTCAATGAGAAACTTGAATCCCTCTGATATTGAGCGGATGGTATCAGTAAAGGGAATGATTATCCGATGTAGTTCAATCATTCCAGAGATTAGGGAGGCTATATTTAGGTGCCTTGTGTGTGGATTCTGCACTGACCCCGTGCCTGTGGAGAGAGGGCGTATAACTGAACCCACTATATGTTTGAGGGAAGAATGCCAATCCAAGAACTCCATGACACTGGTTCACAACAGATGCAGGTTTGCTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTACTAATGCATGACAAGCTGGTGGATACTGGGAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAGAGAACTGTAAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATGAAGAAGACCAATAAGTCCAGGATGCTGGTAGATGATGCTACGGATGTTGATAAGGGCCCAAGCAGAAATGTTGAAGAAGTTCCCTTTGACGAAGAAAAGATGGCTCAACTAAAGGAGCTCTCAAAACAGCCAGATATATATGAAATACTGACAAAGTCATTGGCACCAAACATCTGGGAGCTAGATGATGTTAAGAAAGGTCTCCTTTGCCAGCTTTTTGGGGGCAATGCCTTGAAGTTAGCTTCTGGTGCTAGCTTCCGTGGAGATATAAATATTCTTCTTGTTGGTGATCCTGGGACAAGCAAGTCCCAGCTACTTCAATACATTCACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCTGCTGTTGGATTGACTGCTTATGTAACCAAGGACCCTGAAACTGGAGAAACGGTACTAGAGAGTGGGGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGATGAATTTGATAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCTGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTGCTGGCTTGTGCAAATCCAAGTGGATCAAGATATAACCCTCGCTTGTCCGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGGTTTGATTTAATCTACTTGATGCTTGACAAGGCTGATGAACAAACTGACAGGCGCCTTGCCAAACATATTGTCTCCCTACACTTTGAGAATCCTGAGAACATGGAGCATAATGTGTTAGACATTTCTACATTAACGGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTGGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCAAGGCAGATTGAGAGTCTGATACGCCTAAGTGAGGCATTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGCATGATGTAATGGAGGCATTTCGGCTTTTGGAAGTTGCTATGCAGCAGTCTGCAACGGATCACGCTACTGGAACTATTGACATGGATCTTATTACTACGGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAAAGTTTGTTGCATGCAACTCGCAACCTAATCATGGATAGGATGCAGATTGGGGGACCATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGACACTGTTAGCGAAGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTAGCGACAGAAGGATTTGTTACTATGCACGGGGACAGCGTAAAAAGATCTTGATAACACGAGGCAGTGTCTTTGGAAGCATATTACATTTAATGAGTTTCTGGAGACCACATATTGCTTATTCAGTAGGTAGATAGTAAATACACTTGTAATCCTGATCATGATCACTTAGAAGAACCTACAACATTTGAGGTATTTGAGAGATACCATTAATTATTGTATTCAATACAGTGGATTTTCCTTTGTATTGAAAAAAGTATATTGGTGTTACCTAGATACCTAAGTCAAAATCCACTGGTTGTTATATACTTACATCCTCGGTGGATGTGCTGCATAGAGATCGATTAGATTAACAATGTAGTTAAGAGTTTGTTATTCTATAAAAG | 2920 | 0.4534 | MASDLTPPNFNNGPSSPDDSLSSPIANTFSSPATRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRSGGGRVPATPTSTTDDMPVSSDGGDGYDMDDARPTFVWGTNISVEDVNDAIQRFLRDFREASSKDDDGLPLHTEGKYEKLIRQVIEVEGDSLDVDACDVFDHDPDLYTKMVRYPLEVLAIFDIVLMNMVSRLKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSVKGMIIRCSSIIPEIREAIFRCLVCGFCTDPVPVERGRITEPTICLREECQSKNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHMKKTNKSRMLVDDATDVDKGPSRNVEEVPFDEEKMAQLKELSKQPDIYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFENPENMEHNVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKHDVMEAFRLLEVAMQQSATDHATGTIDMDLITTGVSASERMRRESLLHATRNLIMDRMQIGGPSMRLLELLEELKKQDTVSEVHLNDLRNAIATLATEGFVTMHGDSVKRS | 833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g01703 | 833 | Gene3D | - | 407 | 741 | IPR027417 | - | |
| Pste1g01703 | 833 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
| Pste1g01703 | 833 | Gene3D | - | 112 | 219 | - | - | |
| Pste1g01703 | 833 | Pfam | MCM OB domain | 224 | 353 | IPR033762 | - | |
| Pste1g01703 | 833 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 434 | 750 | IPR027417 | - | |
| Pste1g01703 | 833 | SMART | mcm | 220 | 737 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | ProSiteProfiles | MCM family domain profile. | 423 | 629 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | FunFam | DNA helicase | 404 | 742 | - | - | |
| Pste1g01703 | 833 | Pfam | MCM P-loop domain | 411 | 633 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 603 | 611 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 552 | 565 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 524 | 538 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 464 | 479 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 576 | 588 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | Pfam | MCM AAA-lid domain | 649 | 735 | IPR041562 | - | |
| Pste1g01703 | 833 | SUPERFAMILY | Nucleic acid-binding proteins | 143 | 374 | IPR012340 | - | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 297 | 309 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 585 | 602 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 439 | 450 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 246 | 259 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pste1g01703 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 737 | 746 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pste1g01703 | 833 | Pfam | MCM N-terminal domain | 121 | 220 | IPR027925 | - | |
| Pste1g01703 | 833 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 119 | 794 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste1g01703 | 833 | FunFam | DNA helicase | 251 | 303 | - | - | |
| Pste1g01703 | 833 | ProSitePatterns | MCM family signature. | 532 | 540 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pste1g01703 | 833 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
| Pste1g01703 | 833 | Gene3D | - | 251 | 303 | - | - | |
| Pste1g01703 | 833 | Gene3D | - | 224 | 363 | IPR012340 | - | |
| Pste1g01703 | 833 | Gene3D | - | 742 | 829 | IPR036388 | - | |
| Pste1g01703 | 833 | CDD | MCM4 | 426 | 735 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste1g01703 | Pste-Chr1 | 5233817 | 5239174 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g01703 | 1 | 832 | Core DNA Replication Machinery Family | AT2G16440 | 74.178 | 0.0 | 1264 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste1g01703 | 1 | 5233817 | 5239174 | Pste1g01703 | 1 | 5233817 | 5239174 | ECH |