Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01681 ATGAGAGTTGCATTGATGCTATGCTCGAGAAAGCTCGTACGTTATGTGTTTTTTAAACGTTGTCTATTGCGTAATCTTTGCTCTTCAAGTGCTGCAGAACCAAATGTTGACGCAGAGATACGTGCGCTTTCCACACAAGGGAACATTGAAGAAGCTCTTTCACTTATCTACACTCATCCTTCTCTATCCCTTCAAACCTATGCCTCTATGTTCCATGCTTGTGCTCAGAAAAAATGCCTCCAACATGGCATTGCACTGCACCATTACATTCTTCACCATCACCCCGTTATTCAAAATGACATCTTTCTCACTAATCACATCATTAACATGTACTGCAAGTGTGGCCACTTAGCCTATGCTCGTTACCTGTTTGATCATATGTCATACAGAAACTTTGTTTCTTGGACTGCTCTAATTTCGGGCTATGCCCAATCTCGCCTAATTAGAGAGTGCTTCTCTCTCTTCTCTGCTTTTCTGGCTCACTTTCGCCCCAACCAATTTGCTTTTGCTAGTTTACTTAGCGCGTGTCAGGAGCATCACATTAAATGTGGCACTCAGGTGCATGCAGTTGCTTTGAAAATTTCTTTAGATGCAAATGTATATGTTGCAAATGCTCTTATTACAATGTATAGCAAGTGCTCTAGCTCAAGTGGGGGTCACGGTCGGGCACCTGATGATGCGTGGAGCGTGTTCAAGTCAATGGTGTTTCGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTTCAAGTTCGTGGACTTGGGGACAAGGCCATTCGCCTGTTTGCACAAATGTACTGCAATGGAATTGGGTTTGACCGTGCCACGCTACTTAGTGTTTTTTCTTCACTGAATGAATGCAGTGCTTTTGATGACATTAACATACATCTCTGGAAATGTTTTCAATTGCACTGTCTCACTATTAAAAGCGGTCTTATTTCAGGAATTGAAGTGGTGACTGCATTGATAAAATGCTATGCAAATCTTGGAGGACAAATTTCTGACTGTTATAGAATCTTCCTTGATACAAGTAGCAAATTGGATATTGTGTCATGGACTGCTCTTATTTCTGTGTTTGCAGAAAGGGATCCTGAGCAGGCTTTCCTCCTCTTTTGTCAACTTCATCGTGAAAATTATTTGCCAGACTGGTATACATTCTCAATTGCCTTAAAAGCTTGTGCATATTTTGTGACTGAGCAACATGTCATGGCTATTCACTCACAGGACGGAATTTTACAGTCATTATTGTTTGAGGTTTTAACTGAATAA 1269 0.4074 MRVALMLCSRKLVRYVFFKRCLLRNLCSSSAAEPNVDAEIRALSTQGNIEEALSLIYTHPSLSLQTYASMFHACAQKKCLQHGIALHHYILHHHPVIQNDIFLTNHIINMYCKCGHLAYARYLFDHMSYRNFVSWTALISGYAQSRLIRECFSLFSAFLAHFRPNQFAFASLLSACQEHHIKCGTQVHAVALKISLDANVYVANALITMYSKCSSSSGGHGRAPDDAWSVFKSMVFRNLISWNSMIAGFQVRGLGDKAIRLFAQMYCNGIGFDRATLLSVFSSLNECSAFDDINIHLWKCFQLHCLTIKSGLISGIEVVTALIKCYANLGGQISDCYRIFLDTSSKLDIVSWTALISVFAERDPEQAFLLFCQLHRENYLPDWYTFSIALKACAYFVTEQHVMAIHSQDGILQSLLFEVLTE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01681 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Pste1g01681 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Pste1g01681 422 FunFam Pentatricopeptide repeat-containing protein mitochondrial 182 300 - -
Pste1g01681 422 Gene3D Tetratricopeptide repeat domain 295 409 IPR011990 GO:0005515
Pste1g01681 422 Gene3D Tetratricopeptide repeat domain 32 187 IPR011990 GO:0005515
Pste1g01681 422 NCBIfam pentatricopeptide repeat 240 271 IPR002885 -
Pste1g01681 422 PANTHER OS07G0578800 PROTEIN-RELATED 297 396 IPR045215 GO:0003723|GO:0009451
Pste1g01681 422 Pfam PPR repeat family 348 394 IPR002885 -
Pste1g01681 422 FunFam Putative pentatricopeptide repeat-containing protein mitochondrial 53 181 - -
Pste1g01681 422 Gene3D Tetratricopeptide repeat domain 188 294 IPR011990 GO:0005515
Pste1g01681 422 Pfam PPR repeat 105 131 IPR002885 -
Pste1g01681 422 Pfam PPR repeat 240 270 IPR002885 -
Pste1g01681 422 Pfam PPR repeat 133 156 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01681 Pste-Chr1 5187748 5190311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01681 66 395 Glycoside Hydrolase AT3G49170 29.794 1.58e-31 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01681 1 5187748 5190311 Pste4g01657 4 12423874 12431396 PCT