Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01652 ATGACCCAGATCCAAAAACTATCAGAACCCAAACACCCGAGAAACCAAGAGCCTCAACAAAACCCTAACACCAACACAAGCACCAGCACCTCATCTTGGATGTGGAACCCTAGGGAACAACAGCAGCTGGAAGATGATGATGACTCTTGGGAGGTCAGGGCTTTTGCAGAAGACACAAGGAACATCATGGGCACAACATGGCCTCCCAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGTGACCGTGCTCGCCTCCACCAAGCTCCTCCCTCCAACAACCTCACCTCCTCTTCTCTTCTCTCTTCACCCTTCATCAATATTCCCCCTCAAGACCTTGTTGCCAATGCTGGGTTGTGCCTCCTCTACCACTTGCCCTCAAGCCCTAGTGCACCACCCTTCCCCAACCCCTCTTCTAATGGAGCCTCTCTTTCTCCCTCCACTCTTCTCTCTATCTCATCCTATTCCCCCAACAACTTTCTGATGCAAACAAACTTCAATTTTCCCAGTGCAGCCGCAACTGGGATCAATAGTACTACTGCTTCTTCTTTCAGCTATAACACTTCCAAAGTCGAACAATCCCCAACTTCTTCCTCTATTGATAATGGCCACCTCGCAGACCTTGATCTAGAGCTTCGCCTCGGCCACAAGCCAACACCATCCTCATAA 714 0.5168 MTQIQKLSEPKHPRNQEPQQNPNTNTSTSTSSWMWNPREQQQLEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPPSNNLTSSSLLSSPFINIPPQDLVANAGLCLLYHLPSSPSAPPFPNPSSNGASLSPSTLLSISSYSPNNFLMQTNFNFPSAAATGINSTTASSFSYNTSKVEQSPTSSSIDNGHLADLDLELRLGHKPTPSS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01652 237 Gene3D Classic Zinc Finger 63 118 - -
Pste1g01652 237 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Pste1g01652 237 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Pste1g01652 237 Pfam C2H2-type zinc finger 72 96 - -
Pste1g01652 237 PANTHER OS07G0101800 PROTEIN 44 233 - -
Pste1g01652 237 MobiDBLite consensus disorder prediction 1 49 - -
Pste1g01652 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Pste1g01652 237 SMART c2h2final6 72 94 IPR013087 -
Pste1g01652 237 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01652 Pste-Chr1 5069802 5070515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01652 31 233 C2H2 Transcription Factor Family AT4G17810 40.385 4.23e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g01652 zf-C2H2_6 4.9e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01652 1 5069802 5070515 Pste1g01652 1 5069802 5070515 ECH
Pste1g01652 1 5069802 5070515 Pste7g00790 7 7209734 7210495 PCT