Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01630 CTACTTTCTCGTTGCAACACGGAAACTTTGAAGTTCCGTTTTGTTTTGTTGGTTGCGGCAGCGAGGGAGTGCCCTAGCTATCGAGCTTGGCATCTACGCGACGCGACGCGACTGGGAAGAAATCCGATTATTTTTTCTCTATCTTTCCAACTTTGAAGCTGCGTCGCTAGGTATGGATGAGGGAAAGCATAAATCGAGGAAAGAAATTTATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGAGATCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAATGATGGGAGGCACAGGGATAGGGAGAAGAGGGACCGTGAATCCCGAAGACATGAAAGAGAGAGGAGTACTGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATGTGGACAGAGAAAGAGGTCGGGAAAAGAAAAGGGAAAGGGATAGGGAAGATAGGGAAAGGGAGAGGACAGACAGAGCAAGGGAGAAAGAAAGAGAGAGGGAAAGAAAAGAGGACAAGGAGAGGATTAGAGAAAGAGAAAGGGAAAGAGAAAGGAGGGATCACGAGAGAGAGAAGGAAAAGGAAAAAGAAAGGGGGAGGAGAACAAGAGAGGGAGAAGCTGATGGTGAATCTAAGGAGAGGGACAGAAAGCGGCATAGGAAAGAGGATGGTGATTATAAGAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGGCATTCTGAGGAACATGAAGGAAGCCCCAGAAGAAAGAGTGGTGGAGATGATTTGGATACCAAAGATGAAGAGAGAAAACCTACCCGTGAAGAGGAGATGGAGCATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGAGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCAGAGAGAGAAAAACATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGGAAGACCTGGACGCTTGAAGGGGAATCTGATGATGAAGAAGGACCAGGTAGTGGGAAGCAGGATACAGGTATGGATGTAGATGAAGATGACAAACCGTCTGATAACGAACCTAAGGATGCAATGGTGGTAGACACTGATAGTGGAAAAGTTGCATCTGATTTACAGGATGTACCTGCTGGTGTTCCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTAAACAATGCTGTGACATCGTCACTTTCTGATAAATCTGTTGACATAAAAGCCAAAGATAAAGGGAATGAACAAAGTCGCGGTGCACAGTCAAGGAAAGGTTCCAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTACGCAGATGATGAAATTGAGAGGGATCCACTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAAATTTTTATATTGAAGTGAAGGAGATCTCAAAGATGAGTCCTGAAGAAGCTGCACTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCATCAGACTGGACTTTCAAGCAAAATTTTGGAGACAATAAAGAAGTTAAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGTATTGCTAAAACTGGGTCAGGGAAAACACTTGCTTTTGTTCTGCCGATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCGGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTACTAAGGTACTGGGTCTCAGATGCGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGAATGATTGACATACTATGCACCAGTAGCGGAAAAATAACTAACTTGCGTAGAGTTACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCAACCAGATCGCCAAACAGTTCTGTTCTCTGCCACTTTTCCCCGTCAGGTTGAAATTCTGGCCCGTAAGGTTTTGAATAAACCTGTTGAAATTCAAGTTGGTGGGAGGAGTGTTGTCAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTTCACTCACAGGAGAAATGTGATAGTTTGTTCAAAGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGTGAATCGACAATATCAGATTTTAAAAGCAATGTCTGCAATTTGCTGGTTGCAACAAGTGTTGCTGCCAGGGGATTGGATGTCAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGACTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCCGATCTGCTGAAAGCCTTGGAACTGTCTGAGCAGATTGTTCCGAATGATCTGAAAGCTCTTGCTGATGGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTCAAATTTAATGAGGAGGAAGACGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCTGGGGGTGATATTTCACAGCATCCTGCTTTTGCTCAGATTCTTGCTGTCACTAAAGCGAATGCTCCTGCATTGCCCACTCCAATCTCTGCTGCCCAGCTGTTTTCAAATGGTGGACTACCTCCAGTCTTGCCTGGGGCAGGGCTACCTCTTGCTGCAAACGATGGGGCAGCTCGAGCAGCAGCACTAGCTGCTATAAACTTGCAGGACAAGTTAGCAAAAATACACTCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTAGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACACACAAGGAAACATTAGGCCCTATTTCTGAATGGACTGGAGCAGCCATTACCACCAGGGGACAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACAGAGCATTCTGTTAAGGCAGCTAAAGCAGATTTGAAGCGTGTTTTGGAAGACATCACCAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTTTTAATATGAAATTATAA 3526 0.4424 MDEGKHKSRKEIYEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERERSTDSEDRYDRDREKRKDKDKDVDRERGREKKRERDREDRERERTDRAREKERERERKEDKERIRERERERERRDHEREKEKEKERGRRTREGEADGESKERDRKRHRKEDGDYKKRERERSVSKPSRHSEEHEGSPRRKSGGDDLDTKDEERKPTREEEMEHEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGPGSGKQDTGMDVDEDDKPSDNEPKDAMVVDTDSGKVASDLQDVPAGVPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKSVDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEIERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKMSPEEAALYRKQLELKIHGKDVPKPIKSWHQTGLSSKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIQPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPAFAQILAVTKANAPALPTPISAAQLFSNGGLPPVLPGAGLPLAANDGAARAAALAAINLQDKLAKIHSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKAAKADLKRVLEDITNQALQLPGGTQPGKYSVFNMKL 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01630 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 867 IPR027417 -
Pste1g01630 1117 CDD KH-I_AtRH42_like 1011 1112 - -
Pste1g01630 1117 Coils Coil 95 146 - -
Pste1g01630 1117 CDD DEADc_DDX46 475 696 - -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 902 933 - -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 358 420 - -
Pste1g01630 1117 Pfam Helicase conserved C-terminal domain 720 828 IPR001650 -
Pste1g01630 1117 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 641 649 IPR000629 -
Pste1g01630 1117 SMART helicmild6 747 828 IPR001650 -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 271 311 - -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 1 333 - -
Pste1g01630 1117 SMART ultradead3 505 710 IPR014001 -
Pste1g01630 1117 Pfam DEAD/DEAH box helicase 511 682 IPR011545 GO:0003676|GO:0005524
Pste1g01630 1117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 695 IPR014001 -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 401 416 - -
Pste1g01630 1117 Gene3D - 438 695 IPR027417 -
Pste1g01630 1117 FunFam probable ATP-dependent RNA helicase DDX17 448 698 - -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 902 916 - -
Pste1g01630 1117 Coils Coil 218 255 - -
Pste1g01630 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 844 IPR027417 -
Pste1g01630 1117 CDD SF2_C_DEAD 707 837 - -
Pste1g01630 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 723 867 IPR001650 -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 1 263 - -
Pste1g01630 1117 MobiDBLite consensus disorder prediction 365 379 - -
Pste1g01630 1117 PANTHER RNA HELICASE 431 906 - -
Pste1g01630 1117 Gene3D - 696 870 IPR027417 -
Pste1g01630 1117 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01630 Pste-Chr1 5014278 5019647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01630 473 848 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 1.26e-57 203