Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01623 ATGGGTGCTGGATCAGGTTACGACCCCACCCGGATCAAGATTCCCGGGGTGGCTGAGGCCGTCATGGCGGCGCAGCCTGTCAGGACCACCACCACCACCAACGGGAAGGCGCGCTACAGAGAGTGTCTGAAGAACCACGCTGTCGGAATCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGGCCGCCGGCACGGAGGGCACCCTCGACGCCCTCAAATGCGCCGCCTGCAGCTGCCACCGGAACTTCCACCGCAAGGAGAGCGACGGGGGTGTGCCAATCGCCGGCGACCCGTACCTGCTCGCTCACCACCCTCACCACCACCATCCGCCGCCGCAGTTCGCGGCTTACTACCGGACGCCGGCGGGGTACCTTCACGTGGGGGCACAGCGTGCGGCGGTGGGGACGCTTGCGCTGCCGTCGACGTCCGGCGGCGGCGGAACTCAGAGCACAAGGGAGGACCAGGAAGACATTTCGAACCCGAGTGCAGGAGGAACGGGGTCCAAGAAACGGTTCAGGACCAAGTTCACGCAGGAGCAAAAGGACAAAATGCTCGAACTTGCTGAAAAATTAGGGTGGAGGATTCAGAAACACGACGAGGCTGTGGTCCAAGAATTCTGCAATGAAACCGGGGTTAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 702 0.6239 MGAGSGYDPTRIKIPGVAEAVMAAQPVRTTTTTNGKARYRECLKNHAVGIGGHALDGCGEFMAAGTEGTLDALKCAACSCHRNFHRKESDGGVPIAGDPYLLAHHPHHHHPPPQFAAYYRTPAGYLHVGAQRAAVGTLALPSTSGGGGTQSTREDQEDISNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEAVVQEFCNETGVKRHVLKVWMHNNKHTLGKKP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01623 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 39 88 IPR006456 -
Pste1g01623 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 229 - -
Pste1g01623 233 FunFam Zinc-finger homeodomain protein 2 157 231 - -
Pste1g01623 233 Pfam ZF-HD protein dimerisation region 37 89 IPR006456 -
Pste1g01623 233 MobiDBLite consensus disorder prediction 142 168 - -
Pste1g01623 233 SUPERFAMILY Homeodomain-like 158 231 IPR009057 -
Pste1g01623 233 MobiDBLite consensus disorder prediction 139 174 - -
Pste1g01623 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Pste1g01623 233 Gene3D - 155 231 - -
Pste1g01623 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 38 88 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01623 Pste-Chr1 5000305 5001006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01623 35 229 ZF-HD Transcription Factor Family AT4G24660 55.897 6.35e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste1g01623 ZF-HD_dimer 4.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01623 1 5000305 5001006 Pste7g00347 7 3278469 3279185 PCT