Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01622 CTTGAAAGTCTTGTGGAATGTAACGGACAAGATAACCATTGCACCTGCAGAGTCAACCATGGCTCTCAACCTCGCAAACTACATGCTCCCTACTCCTTATTTTCACCCTTTCTTTTCACACCAAATTCACTTTCACACTCTTTCAAAATCTTTCTTTCTTTCACACTCCAAAATCTCATTCTCACCACTCTCCAAAACCCTATGTCTTTCGCCAAACCCCATTTTTCTCCCATATCTCCAACAATCAGAGCCAGAGCCAGAAAAACAAGAACAAGAGGTCATAGAAACAATAGAAGAAGAACAAGTCTTTGACCCAGATGACCCTATCTACAAATTCTTCAAAACCCGTACTCAGATGTCGTCCCAGGACCCTGGAAAAGAAGGAAAATTGTCCCTTCAGAAGAACCGTCGCATTTCATGGCACCTTGCTTTTGACACCACCGACCAAGTTGAAGCAGAAGCTGAAACGGGTTTGAAGGAAGAAATGGTGAGTGAGAAGAAGGGTTTGCCTTTGCCTGAGGGCATTGTGGGGGAGATTGTTCAGCTTGCAAGGAACTTGCCACAGAATCTGACTCTGGAGGAGGCTTTGGCTGAGTATGAAGGAAGGTTTAGTGAGAAACATTGTTGGGAGGTTTTGAAATTACTTGGGGAGGAGCGCCTTCTGGTGTGTTGTTTGTACTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTTGTTACACCTCGGTCTTGCACTGTGTTGTTTCCTTTGTTAGGGAAAGCAAGGATGGGTGATAAGTTAATGGTCTTGTTCACAAACTTACCCTCCAGCAAGGAGTTCAGAGATGTTCATGTTTACAATGCCGCAATTTCAGGCCTTCTTTCTAGTGGCAGGTATGATGATGCTTGGAAGGTGTACGAGTCAATGGAAGCAGACAATGTTCTTCCAGATCATGTGACATGTTCTATTATGGTTATTGTTATGAGAAAACTTGGCCATAGTGCGAAAGATGCATGGCAATTTTTTGAGGAAATGAATGGCAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAAGCTCTCATCATCCTATCTGAAATGGAGAAGAAAGGCGTTTCTTCAAATGCAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCTGAAGGCCTTTTTGTTGAGATGAAAGCTAAAGGGATTAAGCCCACTGAGGCTACCTTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAATCTGAGATTGTAGAGAAGCTGATGGCTGAAATGCGGGATGTTGGCTTAAAGCCAAACGCCAAATCATATACTTGTCTAATCAGTGCATATGGGAAGCAGAAAAAGATGAGTGACATGGCTGCGGATGCATTCTTGAAGATGAAGAAAGATGGTATTAAACCCACTTCACATTCTTATACAGCTCTTATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGAGTTAAACCTTCCATAGAAACCTACACTGCATTACTAGATGCATTTAGACGTGCCGGTGACACCCAAACATTGCTGAAAATATGGAAGTTGATGAGGAGGAAGAAAATTGAAGGAACACGTGTGACGTTCAACACTCTTGTCGATGGTTTTGCTAAACATGGTTGCTACAAGGAAGCAAGAGATGTAATATCTGAATTTAGGAAGGTTGGATTGCACCCAACAGTGATGACATACAATATGCTGATGAATGCATATGCACGAGGAGGGCGACACTCAAAGCTGCCGGAGTTGTTGGAAGAGATGGCAGCTAATAACATAAAGCCAGATTCTGTAACATATTCAACTATGATATATGCATTTCTCCGTGTTCGAGATTTTAGGCAGGCATTTTTTTATCACCAGGAGATGGTCAAGGTTCGGCAGGTGATGGATGTCAATTCTTATCAGAAGCTTCGGGCGATTCTGGATGTTAAAGCTGCAATTAAAAACAGAAAAGATAGGAGATCCTTGATTGGAGTTGTTAGAAATAAGATGGGTATTGTGAAACCGAAGAGAAAAAAAGATGAGTTATGGAAATACAGGAAAAGACATGTGAAAAAACGGTAGTTCTGATACTTGTGTAAAGTAAGTAATAGATGCAATGCCTTGTAAGGATTGCAAGTACAATTTTGACCCATTTTTTTATTTCTCTAAACGGGTGACATCAAGATTTATG 2270 0.415 MALNLANYMLPTPYFHPFFSHQIHFHTLSKSFFLSHSKISFSPLSKTLCLSPNPIFLPYLQQSEPEPEKQEQEVIETIEEEQVFDPDDPIYKFFKTRTQMSSQDPGKEGKLSLQKNRRISWHLAFDTTDQVEAEAETGLKEEMVSEKKGLPLPEGIVGEIVQLARNLPQNLTLEEALAEYEGRFSEKHCWEVLKLLGEERLLVCCLYFFQWMRSQEPSLVTPRSCTVLFPLLGKARMGDKLMVLFTNLPSSKEFRDVHVYNAAISGLLSSGRYDDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEEMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSEMEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTEATFNILMYAYSRKMQSEIVEKLMAEMRDVGLKPNAKSYTCLISAYGKQKKMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTQTLLKIWKLMRRKKIEGTRVTFNTLVDGFAKHGCYKEARDVISEFRKVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAANNIKPDSVTYSTMIYAFLRVRDFRQAFFYHQEMVKVRQVMDVNSYQKLRAILDVKAAIKNRKDRRSLIGVVRNKMGIVKPKRKKDELWKYRKRHVKKR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01622 700 Gene3D Tetratricopeptide repeat domain 308 426 IPR011990 GO:0005515
Pste1g01622 700 Gene3D Tetratricopeptide repeat domain 427 526 IPR011990 GO:0005515
Pste1g01622 700 Gene3D Tetratricopeptide repeat domain 156 307 IPR011990 GO:0005515
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Pste1g01622 700 Pfam PPR repeat family 431 479 IPR002885 -
Pste1g01622 700 Pfam PPR repeat family 572 619 IPR002885 -
Pste1g01622 700 Pfam PPR repeat family 255 299 IPR002885 -
Pste1g01622 700 Pfam PPR repeat family 362 408 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Pste1g01622 700 Pfam PPR repeat 333 359 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 540 573 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 400 433 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 259 291 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 435 468 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 576 609 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 506 536 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 364 398 IPR002885 -
Pste1g01622 700 NCBIfam pentatricopeptide repeat 610 638 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 467 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Pste1g01622 700 PANTHER OS03G0856100 PROTEIN 65 585 - -
Pste1g01622 700 Gene3D Tetratricopeptide repeat domain 527 699 IPR011990 GO:0005515
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Pste1g01622 700 Pfam Pentatricopeptide repeat domain 492 547 IPR002885 -
Pste1g01622 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01622 Pste-Chr1 4998858 5002437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01622 256 664 Glycosyltransferase AT1G05670 26.341 7.76e-45 169