Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01543 TAGCAATCTTCCTTGCTTCCCGTTGGTTGCATTTTACTTACCTCTTTTAGCATACAATCTTCCATAGGAGGCAAATCAGTTCAAACCAATGGTTTTCCTTCGACAGGGTATGCAACATGTTCGAAATTACTACAACTCTGAAGCTCTAATGCTAAGAGGTAGCTTTCCTCAGCCATTCATCTCTAGGACATACAAAACCAGTTACTTGAAGCCAAGATCAAAGGCAGAGATCAAATTATTGGCTGCTAAGAAACATAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACACTCCGAAATATCCTTCCCAACATAATCAAAAAGGACAAGGCATCAGTATTAGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCAAAGCTGGAAGAACACAATTCTGGTAACCCATCAAAGGATGTTGTTAGGTTTCCAAGTGGGGCAGACAAGTTGAATTTGGAAAGATGCAAAAACGAGGAAGGCCTAGTAAAGGCCACATTGAGTTGTGAGGATAGTCCAGGATTGATGTCATCAATATCAAGGGCACTAGGGTCAGTGAAAACCAAAGTAGTAAAGGCTGAGATAGTGAGTGTGGGTGGGAGATGCAGAAGTGTGTTGTGGGTTCAAGGTCTTGGAAATGATGGTATGGGGAAGCTCAAGAGCACTTTGAAGGTTGTTATGCACAGGCCAGCCTTTAAGATGCGGCGCTTTACTCAGTAA 742 0.4191 MVFLRQGMQHVRNYYNSEALMLRGSFPQPFISRTYKTSYLKPRSKAEIKLLAAKKHSEAEKRRRMRINGQYETLRNILPNIIKKDKASVLAETIKQVKELKKKVSKLEEHNSGNPSKDVVRFPSGADKLNLERCKNEEGLVKATLSCEDSPGLMSSISRALGSVKTKVVKAEIVSVGGRCRSVLWVQGLGNDGMGKLKSTLKVVMHRPAFKMRRFTQ 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01543 217 SMART finulus 57 106 IPR011598 GO:0046983
Pste1g01543 217 Gene3D - 52 118 IPR036638 GO:0046983
Pste1g01543 217 Coils Coil 90 110 - -
Pste1g01543 217 CDD ACT_UUR-ACR-like 144 192 - -
Pste1g01543 217 PANTHER TRANSCRIPTION FACTOR BHLH30 41 209 IPR045847 GO:0003700|GO:0006355
Pste1g01543 217 SUPERFAMILY ACT-like 141 207 IPR045865 -
Pste1g01543 217 Pfam Helix-loop-helix DNA-binding domain 54 100 IPR011598 GO:0046983
Pste1g01543 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 112 IPR036638 GO:0046983
Pste1g01543 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01543 Pste-Chr1 4813360 4814638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01543 50 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 42.143 1.88e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g01543 HLH 1.2e-07 No_clan