Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g01519 | GAGTGGGATGTGTGGTAACGGAAAAACAAAAAAGCGCCACGTGAGCAAGGAATTGGAATTGGAATTGGATGAGGAAAGAAGAAGGGGACTGCCACCACCACCGTGCCCTGACCCTACCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCACTTCGTCGGTTCCACCCGCACTCTCCGCCCTCCTTCTCCCCCCTCCCTCCGCTCCCCACACAAACGCACTAACAACTTGTATCTCCTCCGCCTCCACTCTCCTCGCTTCGTCTTCAAAGCCTCCTTTCATTCCCACTCCATCATCGTCGTCCTCCTCCTCGTCACTCTTTCCGCCGTTTCCTGGCTCCATTTCACTCTCAACTCCAAAAAGAATAAATCTCTTAAACAGACGGGGACATGCTAAATTTGCCTTATCACCTCAAGGAACTAATGTTGGTAACCAGATTATCGGTTTTACGGAATTTCAAAGGGATAAGAGCCTCTCTGAGATTTCGAAAGAGTATCGTGTCTTTGAGGACAACAACGACGTCGACATCCACCTTCCCTATTTGAAATCTTCAGAAGTGGCCCTCGCCACTGACACTTCAGACCCATCCTCCAAGCTACTCCATGACTCTTTCTTACCCACTTCTTTACCGCCTCTCCAGTTTGCTGAGGAAATGGCTATTCAAGTGGAAGAAAGTCATGATGAAGTTGACTCTCACCCCGACTTGCTTTTCAATATGGCCCCATCTCACCATACTGCTTCTTCTGTTTCTGTAAACAATCAACTTGCTGCCATCAACAGTGATCTCATTTTCGCTGAATCTGCTAGAGAAGGACTATACATGTTTTTTGAGGATAACCAGTCTCCAATCACACCCTTGAGTAGTTTTAAGTCATTATCTCCCCGTGCTTCTTTTATGAATAAGAAAGGATTGCCCTCCTCCACACTAAAAGGATTAGGATTATCTACAGATATGTCTCTACAAAGTGCAGAACACGTCAAAGGAGCAGTTAAAACTTCTGGTCACAAAGAAGGCTACCCACTGCAACATGTGAGTAAAAAATTGAGGAAAGGCATCAACTCTTTAAATGACAGGACAAGGAACAATATGGATCACAACACTAGCAAAGTTATGCCCCTGAATGCTCACTCAGTCAAGGTTCATGTTGATCACAAAAATTATCAAATCGGGGAGCATGATGTTCAGGAAATTGATCCTTCAAAGCATCTAAGCAAATATAGTAATTTGCTAAAATCTGGGAGGTTACGTGAATGTATAGAATTGCTTAAAGATATGGAAACAAAGGGACTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACACCTGCAAGAAACAAAAGGCTGTTAAAGAAGCTTTTGATTACATTAGGCTTATTTCAAATCCAACACCGAGTACATTTAATATGCTTATGTCAGTGTGTGCAAGCTCCCAAGATTCAGAAAGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCGACTTGAACCAGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTCGATCTAATGTTTGAAGTGTTTCATAAGATGGTTAATTCTGGAGTGCAACCTAATGTTCATACCTATGGAGCACTTATTGATGGCTGTGCTAGAGCTGGGCAAGTAGCTAAAGCTTTTGGTGCTTATGGAATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTGTTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCAGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAGCTGAAGTACAGCCCATCGACCCAGATCATGTAACTATAGGTGCATTGTTGAAGGCATGCACAAAAGCTGGTCAGGTTGAACGAGCACAAGAAGTGTACAAGATGATACAAAAATATAACATCAAGGGATGTCCAGAAGTTTACACCATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCTTGTACTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGATGAGATATTTCTGAGTGCACTAATAGATGTTGCTGGTCATGCTAAAAAGTTGGATGCCGCCTTTGATGTCCTACAAGAAGCCCATAAAGGAGGAATAAATATTGGAATAATGTCATATAGCTCATTGATGGGTGCCTGTAGCAATGCAAGAAATTGGCAGAAGGCATTGGAGCTATATGAATATCTTAAATCTCTTAAATTGATGACCATAACAGTTTCAACAATTAATGCTTTGCTTACTGCACTTTGTGATGGAGATCAATTTCAGAAGGCTTTGGAGGTTTTATCTGAAATGAAAGGATTAGGATTATGCCCTAACAGTATCACATTCTCTATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCACAAATGCTCCTTTCTCAAGCCAAAAAAGACAATGTACCCCCTAGTCTCATCATGTCTCGTTGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCTTTGTTGGAGAGCCCGTTTTATCTTTTGACTCAGGACAACCACTAGTTGATAATAAGACGTCACTGGCCTTAATGGTGTATCGTGAAACAATTCAAGCTGGTGAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTCCCTTATGATACATCTGTGAAAAATAGACTTGTTGAGAACCTTGAAGTAAGTGCAGAAACTTCAAGAAGCTCAAACATCTGTTCATTAATTGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCAATACTTGAGGAATCTGCTTCACATGGAGTGGTTCCATCTGTGTCATTTAAAGTGAGTCCTATTGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTATACCTCATAACAGTTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTGCAAGATTGCCCAATATAATCATTTTATTGCCTGTAGAGAAAACAGAAGTTGTATCTTCTAAGGGAGAGAAGATTATTAACCTTGCAGGAAGAGCTGGCCAAGCAGTTGCAGCGTTGTTGAGAAGGCTTCAGATTCCTCACCAGGGCAGTGAATCGAATGGGAAGCTTAGAATTAATGGTCTGACTCTGAAAAAATGGTTTCAGCCGCAACTTGCATCTCCATTCAGTGTTAAAGCGGGATCTCCAATATTCAGCGGAAAACCAGGTGGTGATTGGAGCTCATCCTTATCACGACTGGGCAGAGGTATTAGTCATCAGCAACGTAACATACGAACTGGCAATTTGTCTTTGGACTAAGTGTGCATGTATTCATTACCAGCCGAAGACAAGCATCTGCTTTTTGCCTAATACTTTCTTCACTAAACCATCTTAATGTTTTCTCAATATATAAGTTGAAAGCTCCTCCATCCTAATGGTATAATAGAAGAGTGATTTAGACCCAAGAAAGCAGAAATGCTTCTTGAGTGCTGAGGCCATTGAATGCTAGGAGCAGGAAGGTGTACAACTTCTCAGCAATTTCATTCTGGTGAACAAGGTCATACCCGCGGTAGAGTATAAATTTATGGCACATAACTCGTTCTTTTGTGATTGCCTGCAGCCAGCTATGTCATGGCCTTTGCAACGCGGATACATATATGTATATGTATGATGATAGAGATGCAGATATTTTGTGTATGTACTATCTTACATGTAATTTTTTGCCAGATCTCTGCAGATGTAAACTGAAAATACGCAAATTGACTAAAAAAAAAATC | 3765 | 0.4151 | MCGNGKTKKRHVSKELELELDEERRRGLPPPPCPDPTLSLSLSLSLSLALTSSVPPALSALLLPPPSAPHTNALTTCISSASTLLASSSKPPFIPTPSSSSSSSSLFPPFPGSISLSTPKRINLLNRRGHAKFALSPQGTNVGNQIIGFTEFQRDKSLSEISKEYRVFEDNNDVDIHLPYLKSSEVALATDTSDPSSKLLHDSFLPTSLPPLQFAEEMAIQVEESHDEVDSHPDLLFNMAPSHHTASSVSVNNQLAAINSDLIFAESAREGLYMFFEDNQSPITPLSSFKSLSPRASFMNKKGLPSSTLKGLGLSTDMSLQSAEHVKGAVKTSGHKEGYPLQHVSKKLRKGINSLNDRTRNNMDHNTSKVMPLNAHSVKVHVDHKNYQIGEHDVQEIDPSKHLSKYSNLLKSGRLRECIELLKDMETKGLLDMTKVYHAKFFNTCKKQKAVKEAFDYIRLISNPTPSTFNMLMSVCASSQDSERAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVQPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEVQPIDPDHVTIGALLKACTKAGQVERAQEVYKMIQKYNIKGCPEVYTIAINSCSQTGDWEFACTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGINIGIMSYSSLMGACSNARNWQKALELYEYLKSLKLMTITVSTINALLTALCDGDQFQKALEVLSEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDNVPPSLIMSRCIIGMCLRRFEKACFVGEPVLSFDSGQPLVDNKTSLALMVYRETIQAGEKPTSEILSQILGCLQLPYDTSVKNRLVENLEVSAETSRSSNICSLIDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVIDAKELHASTAEVYLITVLKGLKHRLAAGARLPNIIILLPVEKTEVVSSKGEKIINLAGRAGQAVAALLRRLQIPHQGSESNGKLRINGLTLKKWFQPQLASPFSVKAGSPIFSGKPGGDWSSSLSRLGRGISHQQRNIRTGNLSLD | 1099 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g01519 | 1099 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic | 414 | 545 | - | - | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Pste1g01519 | 1099 | NCBIfam | pentatricopeptide repeat | 468 | 501 | IPR002885 | - | |
| Pste1g01519 | 1099 | NCBIfam | pentatricopeptide repeat | 537 | 570 | IPR002885 | - | |
| Pste1g01519 | 1099 | NCBIfam | pentatricopeptide repeat | 645 | 678 | IPR002885 | - | |
| Pste1g01519 | 1099 | NCBIfam | pentatricopeptide repeat | 503 | 536 | IPR002885 | - | |
| Pste1g01519 | 1099 | NCBIfam | pentatricopeptide repeat | 715 | 741 | IPR002885 | - | |
| Pste1g01519 | 1099 | NCBIfam | pentatricopeptide repeat | 751 | 783 | IPR002885 | - | |
| Pste1g01519 | 1099 | Coils | Coil | 793 | 813 | - | - | |
| Pste1g01519 | 1099 | Gene3D | Tetratricopeptide repeat domain | 547 | 710 | IPR011990 | GO:0005515 | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 642 | 676 | IPR002885 | - | |
| Pste1g01519 | 1099 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 | 600 | 691 | - | - | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 570 | 600 | IPR002885 | - | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 500 | 534 | IPR002885 | - | |
| Pste1g01519 | 1099 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC | 213 | 1098 | - | - | |
| Pste1g01519 | 1099 | Gene3D | Tetratricopeptide repeat domain | 714 | 839 | IPR011990 | GO:0005515 | |
| Pste1g01519 | 1099 | Gene3D | Tetratricopeptide repeat domain | 431 | 546 | IPR011990 | GO:0005515 | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | IPR002885 | - | |
| Pste1g01519 | 1099 | FunFam | Pentatricopeptide repeat-containing protein MRL1 chloroplastic | 692 | 840 | - | - | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 712 | 746 | IPR002885 | - | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 607 | 641 | IPR002885 | - | |
| Pste1g01519 | 1099 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 748 | 782 | IPR002885 | - | |
| Pste1g01519 | 1099 | Pfam | PPR repeat | 409 | 430 | IPR002885 | - | |
| Pste1g01519 | 1099 | Pfam | Pentacotripeptide-repeat region of PRORP | 615 | 757 | IPR033443 | - | |
| Pste1g01519 | 1099 | Pfam | Pentacotripeptide-repeat region of PRORP | 444 | 607 | IPR033443 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g01519 | 477 | 884 | Glycosyltransferase | AT1G05670 | 21.553 | 1.20e-09 | 60.5 |