LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01504	AAAGAAACTAAACGAGAAAGAAAGCCACAAAATTAGTATATTACATTCCAGAGAACCATTTTCTGATTATTCAATTTCATCTGCATTGCATTTGCATTTGATTTCGGCGTTGGATTTTGCAATCAGGAATCAAAATTCGGCAACCGAGGAAGGAGGCGATCGGCAATGAGCAGCGGCGGTGGATCGTCGGACGCGGCGGCGGCGAAGGAGAAGGAGAAGGCTCGCGTGAGTCGAACGTCGCTGATTCTGTGGCACGCGCACCAAAACGACGCCGCGTCGGTGCGTAAGCTTCTGGAGGAGGATCCGTCGCTGGTGAAGGCTAGAGATTACGACAGCCGCACGCCGCTGCACGTGGCTTCGCTCCACGGTTGGGTCGATGTCGCGCAGTGCTTGATCGAATTCGGTGCTGACGTCAACGCTCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTGAAAAAATTGCGATGATTGAGCTTTTGAAGTCACATGGAGGCTTGTCTTATGGCCAAACTGGAAGCCACTTTGGGCAGAGGGCTGTTCTTCCCCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCCATTTCAGTTTGCATTGGAAAGGGTTCTTTTGGTGAGATTTTAAAAGCCTATTGGCGTGGAACACCTGTTGCTGTAAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTCATTCAGGACTTCAGGCATGAGGTTAATTTACTTGTGAAGCTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGCTAATTACTGAGTATCTGAGAGGAGGTGATCTTCACAAGTACCTCAAGGACAAAGGTGCACTTAGTCCTTCAACGGCCATCAACTTTGGCTTGGATATTGCTAGAGGGATGGCATATCTTCACAATGAACCAAACGTTATCATTCATCGAGACCTAAAGCCAAGGAATGTTCTTATAGCCAACTCTAGTGCTGACCATTTAAAAGTTGGTGATTTTGGACTAAGTAAGCTTATTAAGGTCCAAAGTTCTCGTGATGTATACAAGATGACGGGTGAAACTGGAAGCTATCGCTATATGGCTCCTGAGGTTTTCAAACACCGGAGGTATGATAAGAAGGTTGATGTGTTCTCCTTTGCAATGATTATGTATGAGATGCTTGAAGGTGAACCCCCTTTCTCAAGTTACGAACCTTATGATGGAGCCAAATATGTGGCAGAAGGACACAGGCCTTCTTTTAAGGCAAAAGGTTATACCCCTGACCTGCGAGAGTAAGTGATTTCTGGTCCTGTGCCTGATTGCTATAGGTTAGAGATGAAAACCATTCGTGCCCTTGAACCTAATAACTTAAGCATCCACTTCCATCTACTCTTAGTTTTACACAAACCCAATGTCTATATTCTTACTGTTTGTGAACTGATGTTAAAGTTAACAGAGCAGTGTTGGTCTGCTGACATGAATCATAGACCTTCATTCATAGATATCCTGAAACGGCTTGAAAAGATCAAGGACAATTTGCCTTCAGATCATCACTGGCACTTGTTCACTTCATGACTATTACCATCCTGCGGGTTGCCTCATCTACTGCTGCGGGGTTTTTGAACCTAGCCAACTTGGAAAACCAAGCTAAGGTCGTGAGCCTTGCTTTGAACTGTTGACTCAAATGAGCATAACAGGTTGATGCCCATTGCGTTTATCAGGTGTTTGTTTACATTTGTTCACTCTCCTGTCTCATTAAAATTCTTGGCGAGTCCCATTCTGCTAATTCAAGTCAGCAGATTCTAGTCATTGCTTAAGTGTAAGATGTAGTGTACAAAACCCATTGAGGAAAAATATAACACATCACGCTATCTACCGTTTAATATTTTATCTTATGTTTAAAATTAATAGTGGTTTCATTTCTT	1946	0.4399	MSSGGGSSDAAAAKEKEKARVSRTSLILWHAHQNDAASVRKLLEEDPSLVKARDYDSRTPLHVASLHGWVDVAQCLIEFGADVNAQDRWKNTPLADAEGAEKIAMIELLKSHGGLSYGQTGSHFGQRAVLPPLPNKCDWEVDPSELDFSISVCIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHKYLKDKGALSPSTAINFGLDIARGMAYLHNEPNVIIHRDLKPRNVLIANSSADHLKVGDFGLSKLIKVQSSRDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMIMYEMLEGEPPFSSYEPYDGAKYVAEGHRPSFKAKGYTPDLRE	383

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01504	383	SUPERFAMILY	Ankyrin repeat	27	114	IPR036770	-
	Pste1g01504	383	Gene3D	-	4	126	IPR036770	-
	Pste1g01504	383	Gene3D	Phosphorylase Kinase; domain 1	141	227	-	-
	Pste1g01504	383	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	267	279	IPR008271	GO:0004672\|GO:0006468
	Pste1g01504	383	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	68	382	-	-
	Pste1g01504	383	ProSiteProfiles	Ankyrin repeat region circular profile.	56	88	-	-
	Pste1g01504	383	ProSitePatterns	Protein kinases ATP-binding region signature.	154	175	IPR017441	GO:0005524
	Pste1g01504	383	SUPERFAMILY	Protein kinase-like (PK-like)	147	372	IPR011009	-
	Pste1g01504	383	SMART	ANK_2a	56	85	IPR002110	GO:0005515
	Pste1g01504	383	ProSiteProfiles	Protein kinase domain profile.	148	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01504	Pste-Chr1	4707932	4713135	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01504	2	383	MAP Kinase Kinase Kinase	AT1G14000	81.586	0.0	663

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Pste1g01504		PK_Tyr_Ser-Thr	4.8e-55	CL0016

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