Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01486 GCACCAAAACCAACATTCCTAATATCTACGCCTTCCCCCCCAATAAGGAAAGTAAAATCCACAAGTACATCCAGCATCAAAGTCCTTACTCAGCCAAACTCTCTTTCAACAGCAACCCCCATCCACCAACATCAACTTCATCTCTTCACTATTCTCACCCCAACAAAAAAAGGAGAAAGAGAAAAGGAAAAATAAAAATCTACCCTTCCCACTCCCAGGATCTGCTACCCAAGCTTTGGTTTCCCAAAAGCTAAATTTAGTTAAACACCTGCATATTAATTTCCCTGCTATGCATCACATGTCCCTCTCACACTAAACAAAACAACACCCTTTGCTTTTGCTTTTCATAACACACTCTATAAATAGTCAACTACTCAGCCTCCCTTTGCTTTTTTAGGATAGATTACGGTGAAGGGAATATAATATGGTCAGGGAGAAGATTCAGATTAAGAAAATCGACAACGCAACCGCGAGGCAGGTTACGTTTTCCAAGCGTCGCAGAGGGCTATTCAAGAAAGCTGAGGAGCTTTCTGTTCTGTGTGATGCTGATATTGGCCTCATAATCTTCTCTTCTACTGGGAAGCTCTTCGAGTACTCAAACTCAAGCATGAAGGAAATACTTGAAAAGCATTATTTGCACTCGAAAAATCTAGCAAGGATGGAGCAACCATCCCTCGAGTTGCAGCTAGTTGAAAACAGCACCTGCTCCAGGTTGAGCAAGGAAGTTGCTGAGAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGTTTAGACATTGAAGAATTGCAACAATTGGAGAGGTCTCTAGAAACTGGATTGGGCCGTGTTATCGAAAAGAAGGGAGAGAAGATTATGAATGAGATAGCTGATCTCCAGAAAAAGGGGATGCTATTAATGGAAGAGAACGAGCGACTAAAACGTCATGTGGCGGGCATAATTAATGGGCAAAGGCATGGTGGTGCCGAATATTCTGAAAACTTTGTTATGGATGAAGGTCAGTCTTCAGAGTCTGTAACGTACGTTTGCAACTCCACTGGACCCCCTCAGGACTATGAAAGCTCAGATACTTCGCTCAAATTGGGGGGTGAGGTTGAGTAG 1108 0.4314 MVREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADIGLIIFSSTGKLFEYSNSSMKEILEKHYLHSKNLARMEQPSLELQLVENSTCSRLSKEVAEKSHQLRQLRGEDLQGLDIEELQQLERSLETGLGRVIEKKGEKIMNEIADLQKKGMLLMEENERLKRHVAGIINGQRHGGAEYSENFVMDEGQSSESVTYVCNSTGPPQDYESSDTSLKLGGEVE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01486 227 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g01486 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste1g01486 227 FunFam Transcription factor, MADS-box 13 83 - -
Pste1g01486 227 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Pste1g01486 227 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Pste1g01486 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Pste1g01486 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste1g01486 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste1g01486 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste1g01486 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste1g01486 227 MobiDBLite consensus disorder prediction 196 227 - -
Pste1g01486 227 Coils Coil 94 114 - -
Pste1g01486 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste1g01486 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g01486 227 MobiDBLite consensus disorder prediction 196 218 - -
Pste1g01486 227 Coils Coil 150 170 - -
Pste1g01486 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pste1g01486 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01486 Pste-Chr1 4682416 4690124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01486 1 223 MADS-box Gene Family AT2G22540 68.511 2.08e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste1g01486 K-box 8.1e-17 No_clan