Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01482 CTGTGGTGTGGTTGCGGCGCTGCCGGCGACCAAACTCTCGTCTCGGCGGCGGTAGCACCTTCTCTAACGGCAACTTGTGAGACTCGGAAATGGAATCTCGGGTCTCTTTCACGAGGACACTTATATGGGCTATTTAAAAAAAATTCTCGCGGTAAGCACCTTACTGACATGGGAACACAACCCCTGCAAATATTTCGTGAGGAAGAAGAGGAGGAGATACCAGGCCGGGGAACTACTATTTCCGGTCAATCAATGTCAACAAGCAGAAGTGTTGGGTCACCATCGAGCCGAAGTGAACAAACAATGGCAACACCAGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGTCAACGAGCTGTTGGAGGTGATAAGAGTGGAAGAGGTCTTCGTCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATGGCGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTTTATGATGCCTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTAAGCGATATTGAAGAGCTAAAGTACGTAGGTCTTCAGAAACTTATACAACGTAATGAACAATTATATAGCTCAGGAAATGCTCCAAATGGAGGTGTATCTTTGCCTTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCACTTTGATTTCAATAGTACTCCCTTTGAGCTTCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGATAATACAACAGACAATCCTACAGATGGCGGTGAAGGTTCTAGCATGTCAGGCTTGTACCATGCACAGGTTCCTACTTCAGTTTCCAATCCTCCAAATAGGCCCCCTTCATCTCCACCACTCCCTGGAATATTAAAGGCAAGGGTTAAGAATGAGCATTGATATGCAATTTTGTACTGTATTGCCTTTTTTGAAGCTTGTTTGTATATTTTGTAAAGTAATTTGTCGGTAGTTAGTTGTCCTTCACAATAGTTAATCAGTAGAGCCAATTCACTCAGTAGCCAGTAGGTTAGAAGCGAATCGGTCTGCTTGAGTCTATATTCACCTGAATTGATGTTGGCAAATTCTTTGCTGACCATATCCATTATTTACTACCTCGAGCCCCCCCCAAACACCCCACATTTTGCGTATTTGCCCGTATGTACTTATTATAGAGAACTTGGTTTGTACTAGTCCATAAAAGATCGTGGAATGCTATTGATCATCATAGGATTAATTTTGGAGTTCACAGATTTTGGCTTTTTTTACTTTTAGAATTTGGGTGTTGGAC 1516 0.4202 LWCGCGAAGDQTLVSAAVAPSLTATCETRKWNLGSLSRGHLYGLFKKNSRGKHLTDMGTQPLQIFREEEEEEIPGRGTTISGQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKYVGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTTDNPTDGGEGSSMSGLYHAQVPTSVSNPPNRPPSSPPLPGILKARVKNEH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01482 375 SMART E2F_TDP_2 146 229 IPR003316 GO:0005667|GO:0006355
Pste1g01482 375 MobiDBLite consensus disorder prediction 122 149 - -
Pste1g01482 375 MobiDBLite consensus disorder prediction 68 110 - -
Pste1g01482 375 MobiDBLite consensus disorder prediction 77 110 - -
Pste1g01482 375 Pfam E2F/DP family winged-helix DNA-binding domain 149 229 IPR003316 GO:0005667|GO:0006355
Pste1g01482 375 SUPERFAMILY "Winged helix" DNA-binding domain 149 230 IPR036390 -
Pste1g01482 375 PANTHER TRANSCRIPTION FACTOR DP 78 242 IPR015648 GO:0005667|GO:0051726
Pste1g01482 375 SMART DP_2 236 373 IPR014889 -
Pste1g01482 375 Gene3D - 141 236 IPR036388 -
Pste1g01482 375 MobiDBLite consensus disorder prediction 320 375 - -
Pste1g01482 375 MobiDBLite consensus disorder prediction 320 350 - -
Pste1g01482 375 FunFam Transcription factor-like protein DPB 141 234 - -
Pste1g01482 375 CDD DP_DD 238 314 IPR014889 -
Pste1g01482 375 SUPERFAMILY E2F-DP heterodimerization region 240 329 IPR037241 -
Pste1g01482 375 Pfam Transcription factor DP 240 329 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01482 Pste-Chr1 4672641 4679369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01482 147 322 E2F-DP Transcription Factor Family AT5G02470 51.000 3.64e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste1g01482 DP 1e-31 No_clan