Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01476 GGCTTATGAGGGGTGGAGGCCCAGTTGAAGTGGTGGAGTATTAATTGGATTGGCGCGAGAGGGTTTTGGAGCAGAAGAAAATGGCGGAAGAGGGCGAGGTTGAAGAAGAGTTCTCTGTTTGGAAGAAGAACACACCTCTCTTGTACGATTTCTTCATCTCACAACCTCTTCAATGGCCCTCTCTCACCGTTCACTGGCTTCCTTCCTCTCCCGAACCCCACTCCCACCCTTCCTTCAATCTCCACACACTCCTTCTCGCCACTCACACTTCCCATGGCGACCCCAACTTCCTCATTCGAGCCCACGCCACCCTACCTTCTTCTGCTCCTTCTCCCTCTCCCACCGATCCTCTTAACCCCCTTCTTCCCAAGGTCGACATTTCCCTAAGGATTCCTGTTGACGGGGAGGTTAATCGAGCGCGTTCTATGCCGCAGAACCCCACCATTGTTGCTGCTAAGACTTGTAATTCCGATGTTTATGTCTTCGATTTCACCAAGCAACACGGGCCTCACTGTCACCCTGATTTCAGGTTAAGGGGTCATGATAAAGAGGGTTATGGTTTATCTTGGAGCCCTTTTAAGAGCGGCTACCTTTTGAGTGCTTCACATGACCATAAGGTTTGCTTGTGGGACGTCCCCGCTGATTCTTCAGATAACGTTCTTGATGCGCTTCATGTTTATCAGGGTCATGACAGCGCGGTTGAAGATGTCTCCTGGAATTTGAAGGATCAGAATATGTTTGGGTCCGCTGGAGATGACAACAAACTCATCATTTGGGACTTGCGTACAAACAAACCCCAACAATCAGTCAAACCTCATGAAAAAGAGGTGAACTTTCTTTCGTTCAGTCCATATAATGAATGGATTTTGGCAACAGCCTCTTCAGATACAACTGTTGGCCTCCTTGATACACGAAAGCTGTCACTGCCACTACATGTTTTAAGTAGCCACACAGATGAAGTATTCCAGGTAGAGTGGGATCCGAATCACGAGACCGTGTTGGCATCTTCTGGTGCTGACAGACGGCTGATGGTTTGGGACCTTAATAGGGTTGGTGATGAGCAGATAGAGGGAGATGGTGAAGGTGGTCCTCCTGAACTACTCTTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACATAAATCAGCCTTGGGTTATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTCTGGCAAATGGCAGAGAGCATTTACAATGATGGAGATGATGACAGCATGTGGATGGCCGATGATTAACTAACCAGACACGTGATCAGAGGCGATGCTCTTACTACCATTGCTTTGTTGTTTTAACGGAATCTATGAGCATTTCATTTTTACTACAATCGCTAATTGGTTTCATGTGAATGTCTTGCGATTATTTAAGAGCTGGAACAGTGATGGCAACATAATATCTTTGTCAAACATGAATTCTCTTATATATGCAGAATTGATCTCTTATGCACG 1481 0.4639 MAEEGEVEEEFSVWKKNTPLLYDFFISQPLQWPSLTVHWLPSSPEPHSHPSFNLHTLLLATHTSHGDPNFLIRAHATLPSSAPSPSPTDPLNPLLPKVDISLRIPVDGEVNRARSMPQNPTIVAAKTCNSDVYVFDFTKQHGPHCHPDFRLRGHDKEGYGLSWSPFKSGYLLSASHDHKVCLWDVPADSSDNVLDALHVYQGHDSAVEDVSWNLKDQNMFGSAGDDNKLIIWDLRTNKPQQSVKPHEKEVNFLSFSPYNEWILATASSDTTVGLLDTRKLSLPLHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNINQPWVISSVAEDNSFHVWQMAESIYNDGDDDSMWMADD 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01476 396 SMART WD40_4 193 233 IPR001680 GO:0005515
Pste1g01476 396 SMART WD40_4 280 320 IPR001680 GO:0005515
Pste1g01476 396 SMART WD40_4 236 276 IPR001680 GO:0005515
Pste1g01476 396 SMART WD40_4 337 377 IPR001680 GO:0005515
Pste1g01476 396 SMART WD40_4 144 184 IPR001680 GO:0005515
Pste1g01476 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 322 IPR001680 GO:0005515
Pste1g01476 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 185 - -
Pste1g01476 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 238 - -
Pste1g01476 396 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 9 79 IPR022052 -
Pste1g01476 396 Gene3D - 1 392 IPR015943 GO:0005515
Pste1g01476 396 Pfam WD domain, G-beta repeat 283 320 IPR001680 GO:0005515
Pste1g01476 396 Pfam WD domain, G-beta repeat 341 376 IPR001680 GO:0005515
Pste1g01476 396 Pfam WD domain, G-beta repeat 238 272 IPR001680 GO:0005515
Pste1g01476 396 Pfam WD domain, G-beta repeat 197 233 IPR001680 GO:0005515
Pste1g01476 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 287 322 - -
Pste1g01476 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 193 IPR001680 GO:0005515
Pste1g01476 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Pste1g01476 396 ProSitePatterns Trp-Asp (WD) repeats signature. 307 321 IPR019775 -
Pste1g01476 396 PANTHER WD40 REPEAT FAMILY 3 389 - -
Pste1g01476 396 SUPERFAMILY WD40 repeat-like 107 378 IPR036322 GO:0005515
Pste1g01476 396 ProSitePatterns Trp-Asp (WD) repeats signature. 171 185 IPR019775 -
Pste1g01476 396 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Pste1g01476 396 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Pste1g01476 396 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01476 Pste-Chr1 4653916 4656807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01476 168 378 Miscellaneous Gene Families AT5G08390 23.223 2.84e-10 60.5