LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01467	CCACGATGGCAACTGTTCAGTAGTCACAGACACCCTTCAACGACCGTAGTTAAACCTCCTTACTCACTTCCATTTCCCTCTTCTTATCCTCTCTCTATTTTCTTACTTCGTCTTCAATGGAATAAGACCAGAAAGAACACAATTTTGGCCAGAGGAGTTGGTGGGGCATTTTGTTTTCTGCCAAGTAGAGGGCTGAGTGACGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGGCTCAGGGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAGCAGCTTGAGGCCATGGACTATAATGACTATATGCCCTTAAGTGTTCTTAAAACTGGAAGTGGTCCAAATTCTAAAGTTTCTATTTTCTATGATGAGAATGAAGCCTTGTCAGCAATCTCTAGTAGTCCTGAAGGCTTCCATGTTGCGATAGTGGAGGTGAGTACAAGCAGTAGCCTTGGAGGTTTCAAATTTCTCGAGAATGCAAAGGACTTGCCTACCATTATGATACCAACAATTCTTCATGTAGTGACTTCAAAGAACCAGTGCCTGAACACCATGATGAAGTGTATCGCACTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGAAAATGTCCTGTCTGAATCACTAAAACCTGTTAAAGAATCTGTAGAATCCATGCTGCAGCTCCAAACAGACAATGGACGAGATAAAAGTACAATTTCAATTGATTTAGAGAATGTGCCCAGGCTTAGTGATAATGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCACCTTCAACCCCACAATTAAAACAAGGGACAAGGTTAGTGGATGATGGAGATTGCCATGAGCAAACTAATTGTTCAACAGAAAAAGAAAGTGGGGAACATGATGGGGAGTGTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGCTGAGAATTCTCCTCAACCAAGGGAACCTGACAAGACTCTGATTAAGTTGGAAGAGGATTTTGCCAATGTCTCCAAGGGTGAGAGTGCTGCTTCACTAAATCCACACAATAAAAAGTTTCTCAGCAATGCCAATGGTAATACATCTCCAAATAAAACAGGTGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACTCCTGAGCTGCATAAAAAATTTGTAAAAGCTGTTGAGCAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGAAATATAGAATACACAAGAGACAAAGTGCACCCGGGGAAGAAGATAAAAAATGGCATAACCAAAGAGATGCAATGCAAAGGAACTATTATAAGCAAAGACCAATCATGGCTTACCCTCCATATCATTCTAATCACACCCTTTCTCCTGCTCCTATATATCCTATGTGGGGGCAACCTGGTAGTCAAACAGCTGGTGCACAGATTTGGTGCCCTCCTGCTTATCCCTTGTGGTATCCCACAGAAAGTTGGCACTGGAAACCATATCCGGGGGTGCATGTGGATGCTTGGGGATGCCCATTGTTACCACCTCCTCAAGCTCCTTGTTTTCCCTACAATCAACATATTCCTGAATTGCACAATCCTAAAGCAGTAGATTATATATCTCGTATGCCACAAAGTTCCTTAGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATGAGCAAGCCATGGTTACCACTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCGTATCCAACATCCCTCTTGGCAACAAGGGTTCTTCTACTCATAAACCTTGTCGACATGTATGA	1926	0.4273	PRWQLFSSHRHPSTTVVKPPYSLPFPSSYPLSIFLLRLQWNKTRKNTILARGVGGAFCFLPSRGLSDDAKPAMVCTANDLQGWKDFPKGLRVLLLEGDSSSAAEIREQLEAMDYNDYMPLSVLKTGSGPNSKVSIFYDENEALSAISSSPEGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMIPTILHVVTSKNQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGENVLSESLKPVKESVESMLQLQTDNGRDKSTISIDLENVPRLSDNDHEQSAVCDKYPAPSTPQLKQGTRLVDDGDCHEQTNCSTEKESGEHDGECKSVETSCENLNAENSPQPREPDKTLIKLEEDFANVSKGESAASLNPHNKKFLSNANGNTSPNKTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEKYRIHKRQSAPGEEDKKWHNQRDAMQRNYYKQRPIMAYPPYHSNHTLSPAPIYPMWGQPGSQTAGAQIWCPPAYPLWYPTESWHWKPYPGVHVDAWGCPLLPPPQAPCFPYNQHIPELHNPKAVDYISRMPQSSLEHHPAEEVVDKVVKEAMSKPWLPLPLGLKPPSMDSVLAELSKQGVSNIPLGNKGSSTHKPCRHV	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01467	641	Gene3D	-	406	470	-	-
	Pste1g01467	641	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	410	447	IPR006447	GO:0003677
	Pste1g01467	641	SUPERFAMILY	CheY-like	88	233	IPR011006	-
	Pste1g01467	641	Gene3D	-	90	242	-	-
	Pste1g01467	641	ProSiteProfiles	Response regulatory domain profile.	91	229	IPR001789	GO:0000160
	Pste1g01467	641	MobiDBLite	consensus disorder prediction	273	299	-	-
	Pste1g01467	641	PANTHER	TRANSCRIPTION ACTIVATOR GLK1	73	626	IPR044825	GO:0003700\|GO:0045893
	Pste1g01467	641	SUPERFAMILY	Homeodomain-like	409	446	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01467	Pste-Chr1	4634324	4640419	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01467	73	626	Response Regulator Gene Family	AT4G18020	44.536	3.80e-118	361

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Pste1g01467		None	None	None

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g01467	1	4634324	4640419	Pste7g00719	7	6581313	6588068	PCT