Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01461 GTTGTTGAACATGCACATAGCTCCCAATCCCAAGTCCTGCAAAACACAGCAATGAGTGCCTCCAGGTTCATCAAGTGCGTCACTGTGGGTGACGGTGCCGTGGGCAAGACTTGCATGCTTATCTCCTACACCAGCAACACTTTCCCCACGGACTATGTTCCGACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTACGCTCCTGGTGTTCCAATTATTCTTGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAATTCTTTCAAGACCATCCTGCTGCAGTGCCTATCACCACAGCACAGGGTGAGGAACTGAGGAAGCTTATTGGTGCTCCAGTTTACATTGAATGTAGTTCGAAAACACAACAGAATGTGAAGGCTGTTTTTGACGCAGCCATCAAGGTAGTTCTCCAGCCCCCAAAGCAGAAGAAAAAGAAGAGCAAGGGGCAAAAAGCCTGTTTCATTTTGTGATCTTTCTTAATATGGTAGTTCGGGAGGATGACATGACTGTAGCCTTTGCCATTCTATCTCTTATACTATTTCTCACCTAGATGAAGGAATCACTATGTCCAACTGACCCAATCAAGGTTCGGTCAAAAGCATCAAAAGCTGTTTGTCTAATTGTCTCTGGCTGTGGGATCTGTACAGTTATAATTTCAATATGTTTGGCGTGCACACAACAATTGCATTTCTCTTGGCTGTTTACCTGTTGTATTGATTATTAAATGACCATTTCCAGCAGTGGACACTGGTTCTATTCATGTTGTAATCTAATCTAGGAAGTGATTGCATATGTGGCTTGGAATGTGAACTAAGTATATGTAATTAATTATGTTAGCTGTTGACTTGGTTAACTTTACGTAAAATC 1042 0.4242 VVEHAHSSQSQVLQNTAMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKSKGQKACFIL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01461 214 SMART rab_sub_5 24 197 - -
Pste1g01461 214 CDD Rop_like 23 195 - -
Pste1g01461 214 PRINTS Transforming protein P21 ras signature 126 139 - -
Pste1g01461 214 PRINTS Transforming protein P21 ras signature 24 45 - -
Pste1g01461 214 PRINTS Transforming protein P21 ras signature 47 63 - -
Pste1g01461 214 PRINTS Transforming protein P21 ras signature 172 194 - -
Pste1g01461 214 PRINTS Transforming protein P21 ras signature 64 86 - -
Pste1g01461 214 FunFam rac-like GTP-binding protein RAC2 22 211 - -
Pste1g01461 214 PANTHER RHO FAMILY GTPASE 21 212 IPR003578 GO:0005525|GO:0007264
Pste1g01461 214 SMART rho_sub_3 26 197 IPR001806 GO:0003924|GO:0005525
Pste1g01461 214 ProSiteProfiles small GTPase Ras family profile. 19 214 IPR001806 GO:0003924|GO:0005525
Pste1g01461 214 Gene3D - 22 208 IPR027417 -
Pste1g01461 214 ProSiteProfiles small GTPase Rho family profile. 17 194 - -
Pste1g01461 214 ProSiteProfiles small GTPase Rab1 family profile. 19 214 - -
Pste1g01461 214 NCBIfam small GTP-binding protein domain 24 188 IPR005225 GO:0005525
Pste1g01461 214 SMART ras_sub_4 21 197 - -
Pste1g01461 214 Pfam Ras family 25 195 IPR001806 GO:0003924|GO:0005525
Pste1g01461 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01461 Pste-Chr1 4610145 4614292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01461 24 197 EF-hand Containing Proteins AT5G27540 27.011 1.29e-16 75.9