Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01447 ATGCTTGGTCGCCATTCATCAACCTTGAGGCGGAATTTGAAGTCTTCATTTTACTATGCTTATCGCAGCAACCATTCCCAACCCCAGAAATCACCGGAAAAAACCGAATGCGAGGAATCTCTTCTCCTCCACTATCTATCCAATGGGTGGCACGAGGAGGCCCGAAAGCTCCTTCAAAATTCCTCCAGAGGAGACCTCCACGCGCGCGTCGTTCGATGGACCTCGTTACTCTCCAGCTTCTCCCTCCACGGTTGCGTAGCTGAAGCTCGCGCACTGTTCGACATAATGCCCCACAGAAACCTCGTAACTTGCAACGCTATGTTGTCCTCTTACCTTCGCTCCGGCATGCTCGACGAGGCTTCCCGCTTCTTCGAGACCATGCCCCATAGGAATGTCGTTTCTTGGACTTCCATGCTTAGTGGGTTTTCTGATGCGGGGAGGATCCAAGATGCCAGGAAGCTGTTCGATTTAATGCCTGAGAAGAATGTTGTTTCCTGGAACGCAATGGTGGCGGCGTTGGTTTGGAATGGGGATTTGGAGGAAGCGAGGATGGTTTTTGAGGAGGTTCCTCTCAAGAATGTGGTTTCGTGGAATGCTATGATTGCAGGTTATGTTGAGAGTGGGAGGATGGATGAGGCAAGAAAATTGTTTGACAAAATGGAGTTTAGGAATGTGGTTACTTGGACTAGCATGATATCTGGTTATTGCCGTAAGGGAAATGTGGAACTGGCTTATTGTTTCTTCCGGGCCATGCTAGAGAAAAATGTTGTTTCTTGGACTGCTATGATTGGTGGGTATGCTTGGAATGGCTTCTGTGAAGAGGCATTATTGCTTTTTCTTGAAATGATGAGAGATTCTGATGCAAAACCCAATGGAGAGACCTTTCTTTCGCTTGTTTATGCTTGTGCTGGTTTGGGTTTTTCTTGCCTTGGCAAGCAGGTACATGCTCAGCTGATTGTTAACAGCTGGAGGATCGATGATTATGATGGTAGGTTGAGTAGAGGTCTTGTTAAGATGTATTCTGGATATGGTATGATGGACTCTGCTAGCAATGTGTTTGAAGTTAATCTGAAAGACTGTGATGATCAGTGTTTCAATTCAATGATAAATGGCTATGTTCAGACCGGTCAACTGGAAAGAGCTCAAGAGTTGTTTGACATGGTACCCATTCGGAACAAGGTTGCATCAACCTGTATGATGGCTGGCTATCTTAGTGCTGGCCAAGTACTCAAGGCTTGGGATTTTTTTAATGAAATGCCTGATAGAGATTCCATTGCCTGGACTGAGTTGATTTATGGGTATGTGCAGAATGAGCTCATTGCTGAAGCCTTCTGCCTATTTGTTGAGATGATGGCTCATGGCGTTCCTCCTTTGAATTCTACATATGCAGTTCTATTTGGAGCCATGGGTTCAGTTGCACATCTTGATCAGGGTCGGCAGTTACATGGTATGCAGTTGAAGACAGTGTATGGAGATGATTTGATTGTAGAGAACTCTCTGATTGCAATGTATGCAAAATGTGGGGAGATAGATGATGCATATAGGATATTCTCTAACATGACTTACCGGGATAAAATTTCTTGGAATTCCATCATCACGGGCCTTTCATATCATGGGAGGGCTAGTGAAGCTCTAAAAGTGGTGGAGTTATTTATTGCCATGGTTAATACCTATGCTATTCAACCTGGCTTGGAGCATTATATTAGTATTATCAATCTTCTGGGCAAAGCAGGGAAGGTGGAGGATGCAGAGGAGTTTGTCTTGAGGCTACCTGTTGAACCAAATCCTGCCATTTGGGGGGCATTGATTGGAGTATGTGGGTTGAGTAAAACCGATGCAGATATTGCTAAACGTGCAGCCAAACGACTGTTTGAGTTGGATCCTTTAAATGCACCAGGCCATGTGACCCTTTGTAATATATATGCCGCCAATGATAGGCACACTGAGTATACAAGTTTAAGAAAAGAAATGAGGATGAAAGGTGTGAGGAAGGTACCCGGATGTAAGGTGCAGTTTGGGTCCCACAAGGGTCTTATGTCTTCCTCTCTCAAACTAGAACTCTTCACTTACACGAAAGGAGCAGGTGGATCTCACAAGGATCTTATGTCCTCCTCTCTCAAACTAGAACTCTCTGATTACGGGAGAGGAACTAGAGCCATGCACCTGGCTTCCACTATCAGAGTTTGGCGGAAGTAA 2196 0.4513 MLGRHSSTLRRNLKSSFYYAYRSNHSQPQKSPEKTECEESLLLHYLSNGWHEEARKLLQNSSRGDLHARVVRWTSLLSSFSLHGCVAEARALFDIMPHRNLVTCNAMLSSYLRSGMLDEASRFFETMPHRNVVSWTSMLSGFSDAGRIQDARKLFDLMPEKNVVSWNAMVAALVWNGDLEEARMVFEEVPLKNVVSWNAMIAGYVESGRMDEARKLFDKMEFRNVVTWTSMISGYCRKGNVELAYCFFRAMLEKNVVSWTAMIGGYAWNGFCEEALLLFLEMMRDSDAKPNGETFLSLVYACAGLGFSCLGKQVHAQLIVNSWRIDDYDGRLSRGLVKMYSGYGMMDSASNVFEVNLKDCDDQCFNSMINGYVQTGQLERAQELFDMVPIRNKVASTCMMAGYLSAGQVLKAWDFFNEMPDRDSIAWTELIYGYVQNELIAEAFCLFVEMMAHGVPPLNSTYAVLFGAMGSVAHLDQGRQLHGMQLKTVYGDDLIVENSLIAMYAKCGEIDDAYRIFSNMTYRDKISWNSIITGLSYHGRASEALKVVELFIAMVNTYAIQPGLEHYISIINLLGKAGKVEDAEEFVLRLPVEPNPAIWGALIGVCGLSKTDADIAKRAAKRLFELDPLNAPGHVTLCNIYAANDRHTEYTSLRKEMRMKGVRKVPGCKVQFGSHKGLMSSSLKLELFTYTKGAGGSHKDLMSSSLKLELSDYGRGTRAMHLASTIRVWRK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01447 731 Gene3D Tetratricopeptide repeat domain 484 681 IPR011990 GO:0005515
Pste1g01447 731 Gene3D Tetratricopeptide repeat domain 38 189 IPR011990 GO:0005515
Pste1g01447 731 NCBIfam pentatricopeptide repeat 133 163 IPR002885 -
Pste1g01447 731 NCBIfam pentatricopeptide repeat 102 132 IPR002885 -
Pste1g01447 731 NCBIfam pentatricopeptide repeat 226 257 IPR002885 -
Pste1g01447 731 NCBIfam pentatricopeptide repeat 397 423 IPR002885 -
Pste1g01447 731 NCBIfam pentatricopeptide repeat 257 291 IPR002885 -
Pste1g01447 731 NCBIfam pentatricopeptide repeat 195 225 IPR002885 -
Pste1g01447 731 NCBIfam pentatricopeptide repeat 426 457 IPR002885 -
Pste1g01447 731 Gene3D Tetratricopeptide repeat domain 190 253 IPR011990 GO:0005515
Pste1g01447 731 Gene3D Tetratricopeptide repeat domain 390 477 IPR011990 GO:0005515
Pste1g01447 731 Gene3D Tetratricopeptide repeat domain 328 389 IPR011990 GO:0005515
Pste1g01447 731 FunFam Pentatricopeptide repeat-containing protein 161 223 - -
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Pste1g01447 731 Pfam E motif 612 668 IPR046848 -
Pste1g01447 731 SUPERFAMILY TPR-like 146 649 IPR011990 GO:0005515
Pste1g01447 731 Gene3D Tetratricopeptide repeat domain 254 319 IPR011990 GO:0005515
Pste1g01447 731 FunFam Pentatricopeptide repeat-containing protein At1g32415, mitochondrial 224 323 - -
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 130 IPR002885 -
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Pste1g01447 731 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 127 IPR046960 GO:0003723|GO:0009451
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Pste1g01447 731 SUPERFAMILY TPR-like 40 189 IPR011990 GO:0005515
Pste1g01447 731 Pfam PPR repeat 257 285 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 364 387 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 397 422 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 567 587 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 164 190 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 226 256 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 526 549 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 73 100 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 133 163 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 498 521 IPR002885 -
Pste1g01447 731 Pfam PPR repeat 102 131 IPR002885 -
Pste1g01447 731 Pfam PPR repeat family 192 225 IPR002885 -
Pste1g01447 731 Pfam PPR repeat family 423 469 IPR002885 -
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 290 IPR002885 -
Pste1g01447 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01447 Pste-Chr1 4560015 4562456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01447 102 668 Glycoside Hydrolase AT3G49170 28.356 1.55e-53 197