Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01441 ATGCATCACCCAACATCATATACTTCTTCTCCTTCTACACATATGGCGCTTTATCTCTTCTGTCGCCTTCTTGCTATCACCTTGATTTTCATGCATACATTTGCAGATACTTCATGCACAGATTGTTTCATTCATTCTCGTGCAGCATATTATCCAAATTCTGAAGAACACGGGACCGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACGGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTATAGAAATGGTGTTGGCTGTGGCGCCTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGTTCGGAAAATGGCGTCACGGCGGTTATAACAGACCAAGGTTCAAGTGATAATACTGATTTCATTCTTAGCAAACATGCCTATAGTCGGATGGCTCAAACCACTGATACCGCTGCTTCTTCCTCAATACGAAGGAGAGACATAACTGCTGTACAACTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATCGGAGCCATGGGGCGGTATGGACTTCTAGCTCTCCACCAAGTGGACCTTTGTCTCTAAGAATGTTGTTTAGTGATGAAGAAGAGGAAGAAGGAACGTGGGTTGTTCCTGTTAATAACATACCCGCAGACTGGAAGGCTGGAGAAACATACGATTCAGGGGTACAAGTTAACCAATAG 684 0.4474 MHHPTSYTSSPSTHMALYLFCRLLAITLIFMHTFADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSAYCSENGVTAVITDQGSSDNTDFILSKHAYSRMAQTTDTAASSSIRRRDITAVQLCETQNFVCKLLDRSHGAVWTSSSPPSGPLSLRMLFSDEEEEEGTWVVPVNNIPADWKAGETYDSGVQVNQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01441 227 Pfam Expansin C-terminal domain 150 204 IPR007117 -
Pste1g01441 227 PANTHER EXPANSIN-B3 150 224 - -
Pste1g01441 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 157 IPR007112 -
Pste1g01441 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 221 IPR007117 -
Pste1g01441 227 CDD DPBB_EXLB_N 44 144 - -
Pste1g01441 227 Gene3D - 145 225 IPR036749 -
Pste1g01441 227 Pfam Lytic transglycolase 81 140 IPR009009 -
Pste1g01441 227 SUPERFAMILY Barwin-like endoglucanases 32 137 IPR036908 -
Pste1g01441 227 Gene3D - 44 144 IPR036908 -
Pste1g01441 227 SUPERFAMILY PHL pollen allergen 149 221 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01441 Pste-Chr1 4545876 4547601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01441 13 223 Expansin Gene Family AT4G17030 33.992 1.42e-37 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01441 1 4545876 4547601 Pste7g00704 7 6408163 6410254 PCT