Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01417 ATGGAGGGAGCGTCGTGGAATAGTAGTGGTGTTTGTGTGGCACCGTTTCTGAGCAAAACCTACGACATGGTCGATGATCCCTCCAACGATTCGGTGGTGTCGTGGGGCAAAAAAGGCAACACCTTTGTTGTCTGGAACGTTCCCCAATTCGCCACAGAAATTTTGCCCAAACATTTTAAGCACAACAACTTCTCCAGTTTCGTCAGGCAGTTGAATACTTATGTGGGCATCGCATCACTTGTTCTCCGATTATTAGATGGTGCTGTTGTGGGGTGGATGGATGATGGAATATGGATCCTTGTTCTTTTCTCTTGGCTTTATGTTATTGCTTTATGA 336 0.4554 MEGASWNSSGVCVAPFLSKTYDMVDDPSNDSVVSWGKKGNTFVVWNVPQFATEILPKHFKHNNFSSFVRQLNTYVGIASLVLRLLDGAVVGWMDDGIWILVLFSWLYVIAL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01417 111 Pfam HSF-type DNA-binding 16 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g01417 111 SUPERFAMILY "Winged helix" DNA-binding domain 15 74 IPR036390 -
Pste1g01417 111 Gene3D - 9 79 IPR036388 -
Pste1g01417 111 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g01417 111 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g01417 111 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g01417 111 FunFam Heat stress transcription factor B-4 8 82 - -
Pste1g01417 111 SMART hsfneu3 12 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g01417 111 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 74 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01417 Pste-Chr1 4484329 4484745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01417 13 74 HSF AT3G02990 75.806 3.27e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste1g01417 HSF_DNA-bind 2.3e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01417 1 4484329 4484745 Pste1g01417 1 4484329 4484745 ECH
Pste1g01417 1 4484329 4484745 Pste4g01627 4 12272983 12274571 PCT