LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01400	AAACTAAATCAATTGAAGAGGTTGAAAACACAACAAATAAATAAATAAAAACAGAGGTAGAAAAAATAGAAGTGAAAACAGTAGCTGTATAAATATAGAAAACAATACAAGGCTCTGACCCAAACCTGGATTTTGCATCATTTTATGCTCCTCTCCTTCCAAAAATAAGCACCGCTCAAAGACTTCCCATTTTTGAAACCCTTCTTCTCTGTTTTCTCCTCTGCTTCCATTTTGCATCCACCCCTTTTCCTTTCTCTCTGTATTCCTCTGCCTCTCACGGTGGCCCTCACTGAATGCGAAGAAGGATTTTCTCTCACCACGCGATTAGTCCTTCTTTTATATTTTAGGTGCGGCCACGAGTTGATTAGATTTGGAATAAACACTCCCATAACACAATATTATGTCACTGTAAGAGTGTGGGGAAGAGGGGAAAAATAGAAGAGAAGGCAAAACTAGAAATGGCATCTTCGGGTAGTAACGTGAAAGAGTCTGCAAGCGACGATGAGGCATCGCCACGGGCTATTCTGGAGACCCCTGTTTCGGGAACAGATTCAGACAACAGCGGAAACAGTGAAAGCTTCAGTTCCGACCTTCAGGCGGAGACTGGAAAAGAGGTTTCGAAGGATGGTTACGTTCAGCAATGGAAGTCCATGATCGATGTTTTCACGTTCAAGAATGTTAAAAAGATAACGTCCAACATTCCTCTGCTTTCCGTGGGCCATGACATCTCTCGAAAAGGGCTCACCAAAAAACTGGCTCGTATTCGAAGCGCCGAAGATGGTATCGATATTGGAGCTATTCCCACGAAACCTTCTTGGAGGAACTTCGATTATGAAGAGCTAGCAGCTGCTACAAATAATTTTAGTTCTGAGAACATCGTTGGGAAAGGTGGTCATGCTGAAGTGTACAAAGGCTGCTTACCTGATGGTCAAGTTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGATGCTGCAGACAGAGCAGGTGATTTCTTAACGGAGCTTGGGATCATTGCACACATAAACCACCCAAATGCCACACGCCTTATTGGGTTTGGAGTTGATCGTGGCCTCTACTTTGTCCTACAATATGCTCCAAATGGCAGTCTTAGTTCTTTGCTTTTTGGTGCCGTGCTTCTTCCATCTCTTGCTTCTCTTTTCATGCCTTCCTTCTCTTATTGCACTTTTATTCCATTGTGCATGGCAAATAAAGACTTGTTCAACATGTCAGGTTCTGAATGCTTCGAATGGAAGAAACGATTCAAGGTAGCAATTGGAGTGGCAGAGGGATTGCGTTATCTCCATAAAGAGTGCCCAAGACGAATTATTCATAGGGACATCAAGGCCTCTAACATACTACTTGACGATAATTTTGAAGCTGAGATTTCAGATTTTGGACTGGCAAAGTGGCTTCCAAATAAGTGGGCTAACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCGGAGTACTTTATGCATGGACTTGTGGATGAGAAAACTGATGTGTTTGCTTTTGGAGTTTTACTGTTGGAGCTCATAACAGGTCGTCGTGCTGTTGATTCAGATAGTAGACAAAGTCTCGTTGTCTGGGCCAAGCCATTTCTGGACACAAACAATGTAAAAGATATAGTTGACCCCAGATTAGGAGAGGAATATATTCTTACTGAAATTAACCGTCTCATGGCGATAGCTTCCATGTGTGTCCACCATGCAGCCTCCAAGCGGCCATACATGAATCAGGTTGTGCCAATACTAAAGGGAGAGGAGATATATATAGAACCAAAGCCAAAATTAGTTGCACAAAAATCTCAATTGTTAGAGGCATGTGATCTTGAAGATTACACTTGCTCAAGTTACTTGAAGGACCTCAATCGGCACAGGCAACTAATCATGGAGTAATCAAATTATAAGTCATTAGTGGGATTGCTTGTTTTTTCCCTATGTATATTTGTTGAAAGGATGGAGTGATATTTGTAGCAGTGTGTGTGGTTAAATCCAAAGTCACAAACCAAATGAGCTTGTTATATTAGCATGGAATTGTAGGGAGCATTACTCAATATGCAAATCATAGTCTAGGCTTTGGATTAACGCCTGAGAAAAATGCAATGTAGAAATGATGCAGAGTTTGTATAACTTTTTGACTCTGCAGTGCCATTCAAACATGTTCATCCATAAGTATATATATTTATATAGTCTCCATCAAATGCGTCTTGTATGCATTTCTCC	2240	0.4121	MASSGSNVKESASDDEASPRAILETPVSGTDSDNSGNSESFSSDLQAETGKEVSKDGYVQQWKSMIDVFTFKNVKKITSNIPLLSVGHDISRKGLTKKLARIRSAEDGIDIGAIPTKPSWRNFDYEELAAATNNFSSENIVGKGGHAEVYKGCLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHPNATRLIGFGVDRGLYFVLQYAPNGSLSSLLFGAVLLPSLASLFMPSFSYCTFIPLCMANKDLFNMSGSECFEWKKRFKVAIGVAEGLRYLHKECPRRIIHRDIKASNILLDDNFEAEISDFGLAKWLPNKWANHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVVWAKPFLDTNNVKDIVDPRLGEEYILTEINRLMAIASMCVHHAASKRPYMNQVVPILKGEEIYIEPKPKLVAQKSQLLEACDLEDYTCSSYLKDLNRHRQLIME	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01400	484	SUPERFAMILY	Protein kinase-like (PK-like)	119	441	IPR011009	-
	Pste1g01400	484	SMART	serkin_6	135	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g01400	484	Gene3D	Phosphorylase Kinase; domain 1	113	212	-	-
	Pste1g01400	484	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	251	450	-	-
	Pste1g01400	484	ProSiteProfiles	Protein kinase domain profile.	135	444	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g01400	484	ProSitePatterns	Protein kinases ATP-binding region signature.	141	163	IPR017441	GO:0005524
	Pste1g01400	484	PANTHER	OS08G0249100 PROTEIN	258	456	IPR046958	-
	Pste1g01400	484	Gene3D	Transferase(Phosphotransferase) domain 1	249	448	-	-
	Pste1g01400	484	MobiDBLite	consensus disorder prediction	25	47	-	-
	Pste1g01400	484	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	290	302	IPR008271	GO:0004672\|GO:0006468
	Pste1g01400	484	MobiDBLite	consensus disorder prediction	1	47	-	-
	Pste1g01400	484	Pfam	Protein tyrosine and serine/threonine kinase	138	436	IPR001245	GO:0004672\|GO:0006468
	Pste1g01400	484	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK1	110	212	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01400	Pste-Chr1	4440511	4445671	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01400	101	440	Trihelix Transcription Factor Family	AT1G70460	40.517	9.05e-71	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Pste1g01400		PK_Tyr_Ser-Thr	2.7e-36	CL0016