Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01394 TGATGATGAGAACACCGAGCAGTGATGAAAGTTGTTTGAAGAAGGGGCCTTGGAGCCCAGAAGAGGATAAAATATTAGTAGAATACATTCAGAAACACGGCCATAGGAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGACTGAGGTGGACTAATTACCTCAGGCCTGATATCAAACGAGGCAAATTCTCTCATGAAGAAGAACAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGGCAGCTATAGCATCTCATATGCCAGGGAGGACTGATAATGAGATAAAGAATTTATGGAACACCCATTTAAAGAAAAAGCTTTTGCAAATGGGATTAGACCCAGTAACTCACCGTCCAAGAACTGATCACCTAAACCTACTTAACAATCTACAACAGATATTGGCTGCAGCAAAAATTGTGAGCAGTTTGACAAACCCTTGTGAAATAAATAATGGTCTAAGGCTACAGTCAGATGCCAAACTCCTCTTATTGCAAAACATTTTTCAACTCAAGAGTACTCCTTCTCATCCTGCCTCAAATTCAGACCCTTTACTCAATCCTTTTGATGTTTTGGGGTTCAATAACCCTAATCTCCAAAACTTCTATGAGAGTCCACTTTCTCAAATCCAGCCCCATTTTCAAAACTTTGAGGTCCCTCATCATGATCAGCTGCCAAAACAACACTGTGGTAATTTAAATAGTAGTATAAGGGAATCTCACAAGTTTGGTTCACCCTCACCATCAAATTCACTTCCAAATCTGGTTTCTGCCTCACCTGAACGTTCCACCACTTTTGAGTTAACGTTGGGAGATTTCATGGATATTGAGGAACCAACAGACACTTACTGGAAAAGTTTCATAGAG 893 0.4065 MMRTPSSDESCLKKGPWSPEEDKILVEYIQKHGHRSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSHEEEQLIINLHAVLGNKWAAIASHMPGRTDNEIKNLWNTHLKKKLLQMGLDPVTHRPRTDHLNLLNNLQQILAAAKIVSSLTNPCEINNGLRLQSDAKLLLLQNIFQLKSTPSHPASNSDPLLNPFDVLGFNNPNLQNFYESPLSQIQPHFQNFEVPHHDQLPKQHCGNLNSSIRESHKFGSPSPSNSLPNLVSASPERSTTFELTLGDFMDIEEPTDTYWKSFIE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01394 297 CDD SANT 69 112 IPR001005 -
Pste1g01394 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste1g01394 297 Gene3D - 13 66 - -
Pste1g01394 297 MobiDBLite consensus disorder prediction 236 266 - -
Pste1g01394 297 CDD SANT 16 61 IPR001005 -
Pste1g01394 297 FunFam MYB-related transcription factor 13 66 - -
Pste1g01394 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 195 - -
Pste1g01394 297 FunFam Transcription factor MYB39 69 130 - -
Pste1g01394 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Pste1g01394 297 SMART sant 13 63 IPR001005 -
Pste1g01394 297 SMART sant 66 114 IPR001005 -
Pste1g01394 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pste1g01394 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste1g01394 297 Gene3D - 69 116 - -
Pste1g01394 297 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pste1g01394 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste1g01394 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01394 Pste-Chr1 4424481 4425736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01394 1 271 MYB Transcription Factor Family AT5G16770 53.047 4.32e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g01394 Myb_DNA-binding 1e-16 CL0123