Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01360 ATGAGTGACAGGGTGTGTGGGAAGGTGAAGTGGTTCAATGATCAGAAGGGGTTTGGATTCATAACCCCAGACGATGGCAGTGAGGATCTCTTCGTTCACCAATCTCAGATCAAATCTGAGGGGTTTCGAAGCCTCGCCGAGGGTGAATCCGTCGAGTTCGCTATCGAATCCGACGCCGACGGACGCGCCAAGGCTGTTGATGTCACTGGCCCCGACGGCGCCTCTGTTCAGGGCAGCCGACGCGGTGCCGACGGAGCCCGCGGCTATGGAGGTGGACGACCCGGAGGATACGGTGGCGGCGGCGGCGGCGGTGGCTATGGGGGCTATGGTGGTGGAGGCGGAGGCTATGGTGGCGGAGGACGCGGCGGCGGCGGCGGCGCCTGTTATAACTGTGGAGAATCTGGCCACCTTGCCAGGGATTGCAGCCAAGGAGGTGGCGGTGGCGGTGGCGGTGGCGATAGATCTGTTTGCTACAATGAATCGTATGATTTTGATTTGTGTGTTGTCTGA 510 0.6039 MSDRVCGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSEGFRSLAEGESVEFAIESDADGRAKAVDVTGPDGASVQGSRRGADGARGYGGGRPGGYGGGGGGGGYGGYGGGGGGYGGGGRGGGGGACYNCGESGHLARDCSQGGGGGGGGGDRSVCYNESYDFDLCVV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01360 169 FunFam Cold shock protein 1 1 69 - -
Pste1g01360 169 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pste1g01360 169 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pste1g01360 169 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Pste1g01360 169 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676
Pste1g01360 169 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 159 - -
Pste1g01360 169 Pfam Zinc knuckle 127 143 IPR001878 GO:0003676|GO:0008270
Pste1g01360 169 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Pste1g01360 169 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Pste1g01360 169 SMART csp_8 6 71 IPR011129 GO:0003676
Pste1g01360 169 MobiDBLite consensus disorder prediction 67 91 - -
Pste1g01360 169 Gene3D - 1 83 IPR012340 -
Pste1g01360 169 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Pste1g01360 169 Gene3D - 125 160 - -
Pste1g01360 169 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Pste1g01360 169 SUPERFAMILY Retrovirus zinc finger-like domains 111 146 IPR036875 GO:0003676|GO:0008270
Pste1g01360 169 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Pste1g01360 169 CDD CSP_CDS 7 70 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01360 Pste-Chr1 4307091 4307940 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pste1g01360 CSD 6.1e-27 CL0021