Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01354 GTGAGTGGCCCTATTCCTTGTCGCCTCCAAACCCGTACCAGAAGGCCTATAAATTCAGAGACACCCCAGTTCATTTTTTCTTCACTCATCTACTCCACATTGTCTCTCACCACAACAATTCAAGCTTCTATGTCAAAGAAAATGGCTCAATTTTGTTTCCTCTTGGTGGGGCTTCTCACAATGTTCTCCTCTGCCTATGGGTATGGATATGGTGGTGGTTGGGTTAATGCACATGCAACCTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTGGGGCTTGTGGATATGGGAACCTCTACAGTCAAGGGTATGGAACAAACACTGCTGCTCTGAGCACTGCTTTGTTCAACAATGGTCTAAGTTGTGGCTCATGCTATGAGATAAGGTGTGTGAATGACCACAGGTGGTGCTTGCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCCAACAATGCAGGGGGATGGTGCAACCCTCCTCTTCACCATTTTGACCTCTCTCAGCCTGTGTTCCTGCGCATTGCACAGTACAGAGCTGGAATTGTGCCTGTGTCTTACCGAAGGGTACCCTGTAGGAGAAGGGGAGGCATAAGGTTCACAATAAATGGCCACTCCTACTTCAACTTGGTCCTGATAACAAATGTAGGAGGTGCTGGGGATGTGCATAGTGTGGCCATTAAAGGTTCCAGAACTGGATGGATGCCAATGTCAAGAAACTGGGGTCAGAACTGGCAGAGCAACAACTACCTCAATGGCCAAAGCCTCTCATTCAAGGTCACAACGAGTGATGGCCGTACTGCTGTGTCCTACAATGTTGCCCCAGCAGGATGGTCCTTTGGCCAAACCTACTCTGGTGCTCAATTCCGCTAGAGACCACAATTATCCCAAGTTCAACTTCCAAGTTCCAAATATATATTTAGATACATTACATATAGTATGTTCTTATAATTTCTCAATTTTTAAGTGTCAGTATATGACTCAATAGTATACTAGGGTATTAAAATAGTATGCTACTTGGTGGAGGGCATTCTAGGGACACTAAGTGATCGAGGGCTTATTTTAAAGTGGCTCTTTATTCATTTTGATTGGGGTCAAAGGGGGATTCTAATTCTTAGGCCTTCTTGATTATATGGGTATTTTTATTTCTAATTTTTTTTTAGAAGCTTTTTCAACCTTTCTGCCGCTGAAAGCTAGCAGACTGGAGTTTCTATATTTTATATTTGTGAAATTGTAACCTACTAAATTGGAGGAGGTGGAATTGTTGTATTGTACCACCCGCCATTAGTATTGGGAAGTTTTTGGGTCCCTATTGGGATTGTTAGAAGTATTGTTTGCTTACTCATCAGTTGTAAGCAACCTTGGGTAAGTATGTCTTTGGTTGTACTGGAAGTGTAAATGTTCCTATTTCTTCATGTAATGGAAAGTTGCAGTTATTTACTA 1464 0.4303 VSGPIPCRLQTRTRRPINSETPQFIFSSLIYSTLSLTTTIQASMSKKMAQFCFLLVGLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTAVSYNVAPAGWSFGQTYSGAQFR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01354 297 PANTHER EXPANSIN-A15 51 296 IPR002963 GO:0009664
Pste1g01354 297 FunFam Expansin 204 296 - -
Pste1g01354 297 PRINTS Expansin signature 279 295 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 162 179 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 179 192 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 250 271 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 143 153 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 131 142 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 104 118 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 203 215 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Pste1g01354 297 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576
Pste1g01354 297 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Pste1g01354 297 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Pste1g01354 297 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576
Pste1g01354 297 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576
Pste1g01354 297 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Pste1g01354 297 SUPERFAMILY Barwin-like endoglucanases 73 222 IPR036908 -
Pste1g01354 297 Gene3D - 204 296 IPR036749 -
Pste1g01354 297 Pfam Lytic transglycolase 109 194 IPR009009 -
Pste1g01354 297 Gene3D - 63 200 IPR036908 -
Pste1g01354 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 204 IPR007112 -
Pste1g01354 297 FunFam Expansin 63 200 - -
Pste1g01354 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Pste1g01354 297 CDD DPBB_EXPA_N 74 199 - -
Pste1g01354 297 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Pste1g01354 297 SMART dpbb_1 109 194 IPR007112 -
Pste1g01354 297 SUPERFAMILY PHL pollen allergen 201 292 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01354 Pste-Chr1 4290110 4292388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01354 48 297 Expansin Gene Family AT2G03090 82.000 7.51e-152 423