Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01348 ATGTTGGCCACTTCATTCCTTTCTAAGACACTTTTTGTTGTCTACTCCTTGCATGCTTGGTTGACACAGAATGGTCCTCAATTGCAGAATGGACTTGACGAATCAACTAATGATGAAGTGGAAGTTCCTCTGAAGGAAGTTGCTAGAAAACAGACTGATCCTCAAGATGGCAATGATACTCCAAACATATGTAAAATTCCTACGGTGAAACTGATAGCCAAAGTAGCTCGTAGGACTAATGAACACAGGAATGCTAAAAGAGATATTGATCATCAAGAAAAAGTTTTCAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAACTACAATGTTAACCAACCCAGGCATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGGGGAACGATTAGAAATGTTCCTGTTGGGGCCGGTAAGCGTAAGAATAAGCACTCAGCTTTGCAGTATTGTCAGGTACCTGTGAATCCTGATGCTACATCTGTCATCTTGACAGATTCCAAACCTGCTAATGACATGTTTAGCAGACTTTCAGCGACTTCAAGACCTGCCAAAGAAATGGAGAACATCCCAAGTCTCAGAGAGGAAGCTCCTGTTAGTGAATCCTTAGAAACAGTGTTAAGTCTCAATGGCCAGACAAACACTGAAGTGGACTCTTCCACTCTCAAAGATGATGTTGAGGAACCTTCTAGCTCCTCTATGGTTTCTAATGAAATAGAGCAGGTTGACTTGACACAACACTCTAATAATCTAAATCCTTTACATTTATTTCATCCATATCCTGTTCCTTCATGGTCTTACCAATGGAATCCATGTTGGAATGTATTGGGGTTTAGGCCTAGTAGCATAAGTTCTAGACCTGCTTTGACAGGTTTTCCAACCATGATAGCAGTTCCTGGCTTCTCCATACCAACAGTAAAACTACCACCAGCACCCTATTCGTATGCGGGTTTCATGTCAAGCTTGGCAGACCAAAAGGAAGAGTCTTCATTTGTTGCATCAACATTTAGTGGCATGTCATTGTCTTCATCTTCAGTTAACAATATTTGTTCTGGTAATAGCTCCCCAACCTTAGGAAAACATTCTAGAAATGGAAGTACACTGAGGGAAGATGCAATAGAACAGAATCTTTGGGTACCTAAAACTGTAAGAATTAAGGACCCAGAAGAGGCTGCAAATAGTTCTTTATGGTCTACTTTGGGAACAAAGTCTGAACAGAACAAACTCATTATGACAGGAAGTGCTTTTAGATCATTTGAACCTGAGTCTAGTGCTAGTTCTCATATTTTAGATGATAGTAAAATTCTAAGGGCAAACCCTGCTGCTTTGTCACGCTCAGAATCTTTCCAGGAAAGCTTGTGA 1398 0.407 MLATSFLSKTLFVVYSLHAWLTQNGPQLQNGLDESTNDEVEVPLKEVARKQTDPQDGNDTPNICKIPTVKLIAKVARRTNEHRNAKRDIDHQEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSALQYCQVPVNPDATSVILTDSKPANDMFSRLSATSRPAKEMENIPSLREEAPVSESLETVLSLNGQTNTEVDSSTLKDDVEEPSSSSMVSNEIEQVDLTQHSNNLNPLHLFHPYPVPSWSYQWNPCWNVLGFRPSSISSRPALTGFPTMIAVPGFSIPTVKLPPAPYSYAGFMSSLADQKEESSFVASTFSGMSLSSSSVNNICSGNSSPTLGKHSRNGSTLREDAIEQNLWVPKTVRIKDPEEAANSSLWSTLGTKSEQNKLIMTGSAFRSFEPESSASSHILDDSKILRANPAALSRSESFQESL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01348 465 Pfam Dof domain, zinc finger 100 157 IPR003851 GO:0003677|GO:0006355
Pste1g01348 465 PANTHER CYCLIC DOF FACTOR 2 71 464 IPR045174 GO:0003700|GO:0006355
Pste1g01348 465 MobiDBLite consensus disorder prediction 215 231 - -
Pste1g01348 465 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Pste1g01348 465 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Pste1g01348 465 MobiDBLite consensus disorder prediction 192 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01348 Pste-Chr1 4275545 4278372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01348 56 464 C2C2-Dof Transcription Factor Family AT5G39660 36.977 2.34e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste1g01348 zf-Dof 5.1e-32 No_clan