Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01322 TCATGTCCAGCAGCACCAAGTGTTGCATGATCTCTTCACTGCAAAACCAGGATGCCCCCACATGTTACCCTTTTCCTTCTCCTCCAATCACAACGGTCTATGAAGACATGATGGGGTCTCTCTCTCTCGCCTCTCTCTCTAATGCTTCTTCTTCTCAAGAGAGTAGTGGTTGCGGTTATGGGGTCGAAACTGGGAGGAGCACTAGTTGGAGTTTTCCTTTCACGAGGGAGTTTCTTTCCTCAAACTTTGAAGACTATAGTGATGTACTGGTTGGGGCTGGGGAGAGTAACAGTAATGAGAAAACACACCATAATGGCAAGTTCAGTGAAGAAAGTAACCCTAGTGACAACCCTGTCAGTGCCAAAGAGGTAGATAGTGGACACTCCAAACTTTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAACTAGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGGTGGTTCAATCAGTTGGATCCAAGGATCAACAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGAATCTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAACCAGTCTGTTTTCAGAAGAGTGGAGCAAAATCCAACCTTTGTTTGCAGCAGAGATAATGGATCAACAACAGAACCAGAACCGTCACCTAGTTCCTGTTGTCCCAATCTCCTCCACAATGGAGTAGTACTCCCCAGTAACATAGCTAGTTATCCATCCTTTCATGGAGTAGCTGCTGCTTCTGGTGTTGGTGTTGAGTTTGGCTTAAATGGTTTTCCACAAAATATCACTAGTGAGAGAGAACCAATGTCAAACACCAGACATGTTGGCTTGTGTGCTCAACAAGCACCGTTTGATTTCTTCTCT 1046 0.4589 MSSSTKCCMISSLQNQDAPTCYPFPSPPITTVYEDMMGSLSLASLSNASSSQESSGCGYGVETGRSTSWSFPFTREFLSSNFEDYSDVLVGAGESNSNEKTHHNGKFSEESNPSDNPVSAKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMNQSVFRRVEQNPTFVCSRDNGSTTEPEPSPSSCCPNLLHNGVVLPSNIASYPSFHGVAAASGVGVEFGLNGFPQNITSEREPMSNTRHVGLCAQQAPFDFFS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01322 348 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Pste1g01322 348 SUPERFAMILY Homeodomain-like 133 226 IPR009057 -
Pste1g01322 348 Gene3D - 186 256 - -
Pste1g01322 348 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Pste1g01322 348 CDD SANT 136 177 IPR001005 -
Pste1g01322 348 FunFam MYB transcription factor 186 256 - -
Pste1g01322 348 Gene3D - 133 184 - -
Pste1g01322 348 CDD SANT 187 227 IPR001005 -
Pste1g01322 348 PANTHER MYB PROTEIN-RELATED 119 262 - -
Pste1g01322 348 FunFam MYB transcription factor 133 184 - -
Pste1g01322 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 179 IPR017930 -
Pste1g01322 348 SMART sant 132 181 IPR001005 -
Pste1g01322 348 SMART sant 184 232 IPR001005 -
Pste1g01322 348 MobiDBLite consensus disorder prediction 93 122 - -
Pste1g01322 348 Pfam Myb-like DNA-binding domain 185 228 IPR001005 -
Pste1g01322 348 Pfam Myb-like DNA-binding domain 133 179 IPR001005 -
Pste1g01322 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 234 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01322 Pste-Chr1 4188404 4189597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01322 126 258 MYB Transcription Factor Family AT1G69560 81.481 4.82e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g01322 Myb_DNA-binding 1.4e-14 CL0123