Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01308 TAAACATTGGCATGCGATCTAAACTGTAACAGAGCTTGAGCGGAGCCTTATTCAGTCACCAACACCAAAAATGGCATCGGCTTTCGTCAAGCTCGATGATTCCCCTATGTTCCAGAAACAGTTATTTTCTATTGAAGAAACAACTGATGAATTAAAAGATCGGTGCCAGAAACTATATAAAGGGTGTAAGAAATTTATGACTGCTCTGGGGGAAGCATATAATGGAGAAATAGCCTTTTCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGGCCCTGTCATATCTAAGTTTATTACCACGTTACGTGAGCTAGCTTCTTTTAAAGAACTTCTTCGTTCTCAGGTAGAGCATGTATTGATTGACCGACTGACAGAGTTTATAAACATTGATTTGCAAGAGGCAAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCGGAAGATGTTGTTGCTGAATTAGAGGAGGTTTGCTGTGTCAATTTGTACATGATTAGTAGCGTCTCAAAAGTTGTAGTTGTATCTATGATTTCCTGTGACTTTCTTGTAGATCTACAAAATTCAAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTTAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCACAGCAATCTAAAGAACTAGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACGCAGGCAGAGCTGGAGAACATACGAGCTTCTAGCAATTACACAGAAACTATGCCAGGTTCTGATGGCACTCATGTTCTTCAAACAGTTAAACAGGGCTATCTGTTAAAACGATCATCAAGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTGCTTGATAACCAAGGAAATTTATGTTATTACAGAGTGAAGGGTGCCAAACCCATGGGCTCTCAGTCATATAATTATACTTGGTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGACACAACAGGGCGGCATCACTAAATGAGGATATTTTAGGTTGTTGTCCAGTTGATCTGTGTACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGGCTTTGCTTCCGAATAATTTCTCCCTCAAAAACATACACACTACAGGCTGAAAATGAAGCTGATAGGATGGACTGGATAAACAAAATTACTGGAGCTATCACATTGCTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATATGGTAGAGTGAATTCACAGAATAAAAACTTGGCAATTAGTGCCCCTTTGGCAAGTCAATCAAAGGATAGTCAGAAATCATTGAAGGATGATGTATATTCCAAGGAAGTGGGTAGTGTCTCTATGATTTTAAGGAAAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATGGTATGTGGAGCAAATGTGCCTACGAAACCTTGTTCTACGGATGCCTTCCAACACAAGGAGAAGTACATCAAGCAAAGTATGTAGAGAAATCACTAATAATCCGAGAAGAGGATATGCCTGAGAACCATTCAGTCTCCATAAGAATCTGGCAAGCAGTTCAGGCTGTAAATGTACGAGAAGTGTATCGCCTTATTGTCACATCAAAATCAAATCTGATAAACACAAAATATGATGAGATTCATTGTTCTGCGGATGCTGAAGGGCATCAGCACGATCCTGAAGCCTGTTTGAAAGTTGAAGAGACTATCGAGACAGAGAGATGCTTCCGTGGATGGTCATTATTACATCTGGCATGTCATTCTGGCCGTGCACTGATGGTTGAGTTGTTGCTCCAATTTGGCGCTGATGTAAACTTGTGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTTCAAGTGGGAAAAATCAATTGGCAAAGTTTCTATTAAGAAGGGGGGCAAGGCCGTCAGTTAAAGATGCTGGAGGTCTCACTGTACTTGAAAGAGCAATGGAGAGAGGCGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCTAGTGAAGATGGTTCTGGTCTATATATTAAGAATGTTGAAGATATCGTGTTGTGCATTAAGAAAAGAAAGTTCCATTTCTTATTTTAGAATTCCTAATTCATCGAAGGGAATTTCATTAATTTTTTTAATTTATATGAATCCATATTTGTTGCATATACTATTAGAAAATACTTAACATGTATCTGTTAATGAAAATTTTAAAACAAG 2486 0.3898 MASAFVKLDDSPMFQKQLFSIEETTDELKDRCQKLYKGCKKFMTALGEAYNGEIAFSDSLEVFGGGQDDPVSVSIGGPVISKFITTLRELASFKELLRSQVEHVLIDRLTEFINIDLQEAKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEVCCVNLYMISSVSKVVVVSMISCDFLVDLQNSKSTFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNYTETMPGSDGTHVLQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGNLCYYRVKGAKPMGSQSYNYTWSSEQNSGMFGRFRSRHNRAASLNEDILGCCPVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWINKITGAITLLFNSQFLQQPQYGRVNSQNKNLAISAPLASQSKDSQKSLKDDVYSKEVGSVSMILRKIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHGMWSKCAYETLFYGCLPTQGEVHQAKYVEKSLIIREEDMPENHSVSIRIWQAVQAVNVREVYRLIVTSKSNLINTKYDEIHCSADAEGHQHDPEACLKVEETIETERCFRGWSLLHLACHSGRALMVELLLQFGADVNLCDYHGRTPLHHCISSGKNQLAKFLLRRGARPSVKDAGGLTVLERAMERGAITDEELFIMLAEC 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01308 736 Gene3D - 578 729 IPR036770 -
Pste1g01308 736 Pfam Putative GTPase activating protein for Arf 491 534 IPR001164 GO:0005096
Pste1g01308 736 Gene3D - 300 449 IPR011993 -
Pste1g01308 736 Pfam BAR domain of APPL family 187 257 IPR004148 GO:0005515|GO:0005737
Pste1g01308 736 Pfam BAR domain of APPL family 8 155 IPR004148 GO:0005515|GO:0005737
Pste1g01308 736 ProSiteProfiles Ankyrin repeat region circular profile. 644 675 - -
Pste1g01308 736 SMART arf_gap_3 486 574 IPR001164 GO:0005096
Pste1g01308 736 CDD BAR_SFC_plant 16 244 IPR035670 -
Pste1g01308 736 Coils Coil 256 276 - -
Pste1g01308 736 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
Pste1g01308 736 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Pste1g01308 736 ProSiteProfiles ARF GTPase-activating proteins domain profile. 486 534 IPR001164 GO:0005096
Pste1g01308 736 CDD PH_ACAP 305 440 - -
Pste1g01308 736 Gene3D Arfaptin homology (AH) domain/BAR domain 7 280 IPR027267 -
Pste1g01308 736 SUPERFAMILY PH domain-like 303 454 - -
Pste1g01308 736 Gene3D Arf GTPase activating protein 479 545 IPR038508 -
Pste1g01308 736 SMART ANK_2a 644 673 IPR002110 GO:0005515
Pste1g01308 736 SMART ANK_2a 677 706 IPR002110 GO:0005515
Pste1g01308 736 SUPERFAMILY Ankyrin repeat 640 726 IPR036770 -
Pste1g01308 736 SUPERFAMILY BAR/IMD domain-like 8 325 IPR027267 -
Pste1g01308 736 Pfam Ankyrin repeats (3 copies) 638 708 IPR002110 GO:0005515
Pste1g01308 736 PRINTS HIV Rev interacting protein signature 498 517 IPR001164 GO:0005096
Pste1g01308 736 PRINTS HIV Rev interacting protein signature 517 534 IPR001164 GO:0005096
Pste1g01308 736 SUPERFAMILY ArfGap/RecO-like zinc finger 489 537 IPR037278 -
Pste1g01308 736 Pfam PH domain 304 435 IPR001849 -
Pste1g01308 736 ProSiteProfiles Ankyrin repeat region circular profile. 677 708 - -
Pste1g01308 736 SMART 5bar 13 247 IPR004148 GO:0005515|GO:0005737
Pste1g01308 736 PANTHER CENTAURIN/ARF 3 534 IPR045258 GO:0005096
Pste1g01308 736 SMART PH_update 303 438 IPR001849 -
Pste1g01308 736 ProSiteProfiles PH domain profile. 302 436 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01308 Pste-Chr1 4159551 4178930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01308 492 534 C2H2 Transcription Factor Family AT3G07940 65.116 3.57e-14 71.6